View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16542_low_4 (Length: 405)
Name: NF16542_low_4
Description: NF16542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16542_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 17109448 - 17109835
Alignment:
| Q |
1 |
tgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17109448 |
tgtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctcttaattgaagagtgtcctaaatttgcatcattt |
17109547 |
T |
|
| Q |
101 |
ccaaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccat |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109548 |
ccaaatggaggattgtctgcacccaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccat |
17109647 |
T |
|
| Q |
201 |
ctctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109648 |
ctctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttc |
17109747 |
T |
|
| Q |
301 |
caaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17109748 |
caaccttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtct |
17109835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 3 - 386
Target Start/End: Original strand, 16978118 - 16978501
Alignment:
| Q |
3 |
tttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttcc |
102 |
Q |
| |
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|||||||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16978118 |
tttataagtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttcc |
16978217 |
T |
|
| Q |
103 |
aaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatct |
202 |
Q |
| |
|
||| |||||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
16978218 |
aaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatct |
16978317 |
T |
|
| Q |
203 |
ctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcca |
302 |
Q |
| |
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|| |||||||| |||||| ||||||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || | |
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| T |
16978318 |
ctttataagctatctatagatgattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaa |
16978417 |
T |
|
| Q |
303 |
accttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagt |
386 |
Q |
| |
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| ||||| |||||||| ||||||||||| || || | ||||||||||||| | |||||||||| |||||| ||||||||||| |
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| T |
16978418 |
aacttcttatcaactcgctgaaatgggctttgccgaccaatacatctctctctaacatgtatattcaagaattagatgtggagt |
16978501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 3 - 388
Target Start/End: Original strand, 17029990 - 17030375
Alignment:
| Q |
3 |
tttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttcc |
102 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17029990 |
tttataagtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttcc |
17030089 |
T |
|
| Q |
103 |
aaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatct |
202 |
Q |
| |
|
||| |||||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
17030090 |
aaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatct |
17030189 |
T |
|
| Q |
203 |
ctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcca |
302 |
Q |
| |
|
|| |||||||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || | |
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|
| T |
17030190 |
ctttataagctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaa |
17030289 |
T |
|
| Q |
303 |
accttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtct |
388 |
Q |
| |
|
| ||||| |||||||| ||||||| || || || | |||||||| |||| | ||||||||| |||||| |||||||||||||| |
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| T |
17030290 |
aacttcttatcaactcattgaaatgtgctttgtcaaccaatacatcgctctttaccatgtatattcaagaagcagatgtggagtct |
17030375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 3 - 388
Target Start/End: Original strand, 17048328 - 17048713
Alignment:
| Q |
3 |
tttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaattgaagagtgtcctaaatttgcatcatttcc |
102 |
Q |
| |
|
|||||||||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17048328 |
tttataagtgtagtagttttgaaatgatttcacaggaaaatgagcatcttaaactcacatctctctcaattggagagtgtcctaaatttgcatcatttcc |
17048427 |
T |
|
| Q |
103 |
aaatggaggattgtctgcaccaaggcttcagcagttttatctttcaaaattagaggagttaaaatcacttcctgaatgcatgcatatcctccttccatct |
202 |
Q |
| |
|
||| |||||||||||| |||||||||| || || ||| || |||| ||||| ||| | ||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
17048428 |
aaaaggaggattgtctacaccaaggctgcaacactttgatatttccaaattggagaatttaaaatcacttcctaaatgcatgcatgtcctccttccatct |
17048527 |
T |
|
| Q |
203 |
ctctataagctgtctataaatgattgtccacaattggtgtccttctccgctagaggtttgccttcaagtataaaaagcctccttctcattaaatgttcca |
302 |
Q |
| |
|
|| |||||||| |||||| || |||||||||| |||| ||| ||||||| | |||||||||| ||||| ||| || |||| |||| | ||||| || | |
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|
| T |
17048528 |
ctttataagctatctatagataattgtccacagttggagtcgttctccgatggaggtttgccatcaagcctaagaaacctctttcttgtgaaatgctcaa |
17048627 |
T |
|
| Q |
303 |
accttctcatcaactccctgaaatgggcgtttccagcaaatacatctctctgttacatgtatatccaagaaacagatgtggagtct |
388 |
Q |
| |
|
| ||||| |||||||| ||||||| || || || | |||||||| |||| | ||||||||| |||||| |||||||||||||| |
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|
| T |
17048628 |
aacttcttatcaactcattgaaatgtgctttgtcaaccaatacatcgctctttaccatgtatattcaagaagcagatgtggagtct |
17048713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 17024324 - 17024395
Alignment:
| Q |
2 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
73 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
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|
| T |
17024324 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17024395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 17024488 - 17024531
Alignment:
| Q |
161 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17024488 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17024531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 17035086 - 17035157
Alignment:
| Q |
2 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
73 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
17035086 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17035157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 17035250 - 17035293
Alignment:
| Q |
161 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
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|
| T |
17035250 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17035293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 17089596 - 17089667
Alignment:
| Q |
2 |
gtttataagtgtattaatttcgaaatgatttcacaggaaaatgaacatcttaaactcacatctctctcaatt |
73 |
Q |
| |
|
|||||||||| || |||||| ||||||| ||| |||||||||||||||||| ||| | || |||||||||| |
|
|
| T |
17089596 |
gtttataagtttaataattttgaaatgaattcctaggaaaatgaacatcttatacttaaatatctctcaatt |
17089667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 17089760 - 17089803
Alignment:
| Q |
161 |
ttaaaatcacttcctgaatgcatgcatatcctccttccatctct |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
17089760 |
ttaaaatcacttcctaaatgcatgcatatcttctttccatctct |
17089803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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