View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_high_16 (Length: 397)
Name: NF16543_high_16
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 27977346 - 27977718
Alignment:
| Q |
5 |
gttgagaagacacttgatgaacttgatcaagctattgggattagtagtgttcatagagagacaaaaaagaacacaaaaggtaatagaatacctttgaggt |
104 |
Q |
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| T |
27977346 |
gttgagaagacacttgatgaacttgatcaagctattgggattagcagtgctcatagagagacaaaaaagaacacaaaaggtaatagaatacctttgaggt |
27977445 |
T |
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| Q |
105 |
ctatcttgtttggtgtcaagttaaagagacaaaagcagtatcaatcactgttttcatgtgtcaatcctacactgtctaaacaaaatagtatcaatgagca |
204 |
Q |
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| T |
27977446 |
ctttcttgtttggtgtcaagttaaagagacaaaagcagtatcaatcactgttttcatgtgtcaatcctacactgtctaaacaaaatagtatcaatgagca |
27977545 |
T |
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| Q |
205 |
aacaccagctccaatagagagagagcaaatttgatttcctttatttgagtacttgaaaaattgttaaggttatattgtagtgtgattgtgtgacaatata |
304 |
Q |
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| T |
27977546 |
agtaccagctccaatagagagagagcaaatttgatttcctttatttgagtacttggaaaattgttaagg--atattgtagtgtgattgtgtgacaatata |
27977643 |
T |
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| Q |
305 |
tagaacatgaatgttattatggtatttctaatttcaaggttggattttcttctataattcttgaatctttaaaat |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27977644 |
tagaacatgaatgttattatggtatttctaatttcaaggttggattttcttctataattcttgcatctttaaaat |
27977718 |
T |
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