View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_high_20 (Length: 349)
Name: NF16543_high_20
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 9e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 6942697 - 6942910
Alignment:
| Q |
4 |
cgtgagatatttgcattgaggatcgttattggtgttggac----acatcacaaattgtgtttgaacaaaatgttgttttagttatcaccaagtttgatgc |
99 |
Q |
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| T |
6942697 |
cgtgagatatttgcattgaggatcgttattggtgttggacttggacatcacaaattgtgtttgaacaaaatgttgttttagttatcaccaagtttgatgc |
6942796 |
T |
|
| Q |
100 |
atgcattgtacttccagaaaaatggatgagataatttatcaaactgagtattgcttcaaagattggttgcatcaagaatctatcaaaatggttgagagaa |
199 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
6942797 |
atgcattatacttccagaaaaatggatgagataatttatcgaactgagtattgcttcaaagattggttgcatccagaatctatcaaaatgattgagagaa |
6942896 |
T |
|
| Q |
200 |
tttatcagatgctc |
213 |
Q |
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|||||||||||||| |
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| T |
6942897 |
tttatcagatgctc |
6942910 |
T |
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