View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_high_21 (Length: 348)
Name: NF16543_high_21
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 54720490 - 54720746
Alignment:
| Q |
16 |
attcttatatagttgagttcgagctaaaaagaagattttaaacgaatttgagtcaaattttaagctgagctaatttttatcaaaccgaattcaataaagt |
115 |
Q |
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| T |
54720490 |
attcttatatagttgagttcgagctaaaaagaagattttaaatgaatttgagtcaaattttaagctgagctaattcttatcaaatcgaattcaataaagt |
54720589 |
T |
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| Q |
116 |
tcgactcatttctagcctatttaaagagagaattttttctcccatttttcatcttaaaagatgtgtgttttacacgcttattaaagaaatagttagatgt |
215 |
Q |
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| T |
54720590 |
tcgaatcatttctagcctatttagagagagaattttttcttccatttttcatcttaaaagatgtgtgttttacacgcttattaaagaaatagttagatgt |
54720689 |
T |
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| Q |
216 |
gctgattttaatagtaaaatgttatttcatttactagaacagcttactgatcatagt |
272 |
Q |
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| T |
54720690 |
gttgattttaatagtaaaatgttatttcatttactagaacaccttactaatcatagt |
54720746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 35450307 - 35450249
Alignment:
| Q |
274 |
tccgaagcaggtccagttccagtgcaatcaagcttagtatctttactcggcggtttata |
332 |
Q |
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| T |
35450307 |
tccgaagcaggtccagttccagtgctatcaagcttagtatctttactcggcggtttata |
35450249 |
T |
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