View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16543_high_26 (Length: 318)

Name: NF16543_high_26
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16543_high_26
NF16543_high_26
[»] chr8 (13 HSPs)
chr8 (15-299)||(6431906-6432189)
chr8 (16-102)||(22658641-22658727)
chr8 (15-100)||(2962058-2962143)
chr8 (15-102)||(26242120-26242206)
chr8 (15-104)||(8370382-8370470)
chr8 (15-77)||(21970413-21970473)
chr8 (15-102)||(26652414-26652501)
chr8 (26-84)||(21917769-21917827)
chr8 (26-82)||(29561943-29561999)
chr8 (26-82)||(45533424-45533480)
chr8 (26-82)||(22646850-22646906)
chr8 (25-80)||(27013816-27013868)
chr8 (26-80)||(27006673-27006724)
[»] chr5 (13 HSPs)
chr5 (16-102)||(7864572-7864658)
chr5 (15-102)||(9810870-9810958)
chr5 (15-102)||(12764126-12764214)
chr5 (15-102)||(12703111-12703199)
chr5 (15-103)||(31097894-31097981)
chr5 (21-102)||(39428509-39428590)
chr5 (15-81)||(25804532-25804596)
chr5 (26-81)||(32993-33049)
chr5 (15-102)||(20942119-20942206)
chr5 (26-82)||(23547017-23547073)
chr5 (26-82)||(24932457-24932513)
chr5 (15-51)||(22942308-22942344)
chr5 (26-66)||(5098670-5098710)
[»] chr2 (5 HSPs)
chr2 (15-103)||(24228356-24228444)
chr2 (16-100)||(32739151-32739235)
chr2 (26-81)||(24249184-24249240)
chr2 (26-59)||(24761927-24761960)
chr2 (15-59)||(19617490-19617534)
[»] chr7 (14 HSPs)
chr7 (15-102)||(34129659-34129747)
chr7 (15-102)||(47165996-47166083)
chr7 (15-102)||(18258259-18258347)
chr7 (15-102)||(28131616-28131704)
chr7 (15-111)||(19231955-19232052)
chr7 (15-102)||(10666192-10666280)
chr7 (15-88)||(41680197-41680271)
chr7 (15-102)||(8466083-8466169)
chr7 (26-81)||(12188767-12188823)
chr7 (26-83)||(18138487-18138544)
chr7 (26-81)||(19860212-19860268)
chr7 (26-82)||(48807667-48807723)
chr7 (26-80)||(2205646-2205700)
chr7 (26-82)||(15730848-15730904)
[»] chr6 (13 HSPs)
chr6 (15-102)||(33317944-33318032)
chr6 (15-102)||(5754155-5754242)
chr6 (16-102)||(8613993-8614080)
chr6 (15-102)||(14075573-14075660)
chr6 (15-102)||(18018953-18019039)
chr6 (26-81)||(27507500-27507555)
chr6 (26-81)||(27524714-27524769)
chr6 (26-82)||(11250653-11250710)
chr6 (17-64)||(10358254-10358301)
chr6 (26-82)||(1585257-1585313)
chr6 (26-81)||(16790157-16790212)
chr6 (16-65)||(21996868-21996917)
chr6 (25-80)||(22859044-22859096)
[»] chr3 (11 HSPs)
chr3 (16-103)||(28089214-28089302)
chr3 (15-102)||(15316312-15316399)
chr3 (15-100)||(25977856-25977942)
chr3 (15-102)||(15845655-15845741)
chr3 (15-103)||(21035329-21035416)
chr3 (15-83)||(13330234-13330302)
chr3 (15-81)||(21399879-21399944)
chr3 (26-83)||(55428119-55428176)
chr3 (26-82)||(12300992-12301048)
chr3 (26-82)||(12332293-12332349)
chr3 (26-80)||(20146708-20146762)
[»] chr4 (18 HSPs)
chr4 (15-100)||(15651535-15651620)
chr4 (15-102)||(4547146-4547233)
chr4 (15-102)||(15462598-15462684)
chr4 (15-81)||(28916923-28916987)
chr4 (15-101)||(34976606-34976690)
chr4 (26-81)||(2678107-2678163)
chr4 (26-81)||(15821786-15821842)
chr4 (26-81)||(26532708-26532764)
chr4 (26-82)||(3356069-3356125)
chr4 (26-82)||(4675101-4675157)
chr4 (26-82)||(18164257-18164313)
chr4 (26-82)||(20245033-20245089)
chr4 (26-81)||(18110195-18110250)
chr4 (26-80)||(15816115-15816169)
chr4 (23-82)||(11482960-11483016)
chr4 (26-81)||(5871512-5871567)
chr4 (26-82)||(17299106-17299162)
chr4 (25-77)||(38817731-38817782)
[»] scaffold0037 (1 HSPs)
scaffold0037 (15-102)||(38702-38788)
[»] scaffold0017 (1 HSPs)
scaffold0017 (15-104)||(128577-128665)
[»] chr1 (17 HSPs)
chr1 (15-103)||(28133846-28133934)
chr1 (15-102)||(22613569-22613655)
chr1 (15-102)||(43801496-43801582)
chr1 (15-102)||(19705605-19705691)
chr1 (15-102)||(28145331-28145418)
chr1 (15-79)||(35936403-35936466)
chr1 (26-83)||(14482985-14483042)
chr1 (20-103)||(47666616-47666699)
chr1 (26-82)||(20390392-20390448)
chr1 (26-81)||(20778797-20778853)
chr1 (26-82)||(22239876-22239932)
chr1 (25-80)||(22669411-22669466)
chr1 (26-83)||(9457210-9457267)
chr1 (26-83)||(9461307-9461364)
chr1 (26-82)||(33262848-33262904)
chr1 (26-82)||(33283007-33283063)
chr1 (26-80)||(42816143-42816197)
[»] scaffold0112 (1 HSPs)
scaffold0112 (15-102)||(1275-1362)
[»] scaffold0686 (1 HSPs)
scaffold0686 (15-102)||(7645-7731)
[»] scaffold0389 (1 HSPs)
scaffold0389 (15-84)||(1246-1314)
[»] scaffold1849 (1 HSPs)
scaffold1849 (26-81)||(207-263)
[»] scaffold0069 (1 HSPs)
scaffold0069 (15-102)||(302-388)
[»] scaffold0018 (1 HSPs)
scaffold0018 (26-84)||(197208-197266)
[»] scaffold0264 (1 HSPs)
scaffold0264 (26-81)||(2828-2884)
[»] scaffold0193 (1 HSPs)
scaffold0193 (26-82)||(32304-32360)
[»] scaffold0022 (1 HSPs)
scaffold0022 (20-107)||(73322-73408)
[»] scaffold0019 (1 HSPs)
scaffold0019 (26-82)||(18614-18670)
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-102)||(137827-137913)
[»] scaffold0028 (1 HSPs)
scaffold0028 (26-80)||(120824-120878)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 299
Target Start/End: Original strand, 6431906 - 6432189
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttcaattttatgggtc 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  6431906 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattctattttgaattcaattttccttcaattttatgggtc 6432005  T
Q  115 catccaaatttcatcatattggcttaacacttttcctattgtggtcagatggattccaattatataactaataaacatcgacaatagttgcttgagtgtg 214  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6432006 catccaaatttcatcagatt-gcttaacacttttcctattgtggtcagatagattccaattatataactaataaacatcgacaatagttgcttgagtgtg 6432104  T
Q  215 ttagtgtcacttctaccgagttaacgtactttatttaa--annnnnnngtatggtgtacgagaaggaaaacaatgtcgagctctaga 299  Q
    |||||||||||||||||  ||| |||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  6432105 ttagtgtcacttctacc--gttcacgtactttatttaattttttttttgtatggtgtacgagaaggaaaacaatgtcgagctctaga 6432189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 22658727 - 22658641
Alignment:
Q  16 attcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22658727 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattctgttctgaattcgattttccttca 22658641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 2962143 - 2962058
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttcctt 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  2962143 gattcatgtataattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgtttattctgttttgaatttgattttcctt 2962058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 26242120 - 26242206
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||| | ||| || |||||||||||||| || || ||||||||||||||    
T  26242120 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaataattt-tctgctgcttattctgtattaaaatcgattttccttca 26242206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 8370470 - 8370382
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttcaat 104  Q
    |||||||||||||||||||||||| |||| ||||||||||| || | || ||||||||||||||||| || || ||||||||||||||||    
T  8370470 gattcatgtgtaattcgtaatgatccaagaaaagaaaatcg-aattattttccgctgcttattctgtattaaaatcgattttccttcaat 8370382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 21970413 - 21970473
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttatt 77  Q
    |||||||||||| ||||||||||| |||||||||||||||||||  ||| |||||||||||||    
T  21970413 gattcatgtgtagttcgtaatgatccaaggaaagaaaatcgaaa--tttttccgctgcttatt 21970473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 26652501 - 26652414
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||   || || ||||||||||||||| |  | ||||||||||||||    
T  26652501 gattcatgtgtaattcgtaatgatctaaggaaaaaaaatcgaaataattttctgctgcttattctgttattcaatcgattttccttca 26652414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 21917769 - 21917827
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtttt 84  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||||    
T  21917769 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtttt 21917827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 29561943 - 29561999
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  29561943 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 29561999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 45533480 - 45533424
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  45533480 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 45533424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 22646850 - 22646906
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||| |||||||    
T  22646850 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgctttttctgtt 22646906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 27013868 - 27013816
Alignment:
Q  25 taattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    |||||||||||||| ||||||||| ||||||||   ||| ||||||||||||||||    
T  27013868 taattcgtaatgatccaaggaaagtaaatcgaa---tttttccgctgcttattctg 27013816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 27006724 - 27006673
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    ||||||||||||| ||||||||| ||||||||   ||| ||||||||||||||||    
T  27006724 aattcgtaatgatccaaggaaagtaaatcgaa---tttttccgctgcttattctg 27006673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 7864658 - 7864572
Alignment:
Q  16 attcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7864658 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 7864572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 9810958 - 9810870
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9810958 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgttttgaattcgattttccttca 9810870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 12764214 - 12764126
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12764214 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgttttgaattcgattttccttca 12764126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 12703199 - 12703111
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaatttt-atccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12703199 gattcatgtgtaattcgtaatgatccaaggaaagaaaattgaaaatttttatccgctgcttattctgttttgaattcgattttccttca 12703111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 31097894 - 31097981
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttcaa 103  Q
    |||||||||||||||||||||||| |||||||||||||||||| | ||| ||||||||||||||||| || || |||||||||||||||    
T  31097894 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaataattt-tccgctgcttattctgtattaaaatcgattttccttcaa 31097981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 39428509 - 39428590
Alignment:
Q  21 tgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgc-ttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||  |||||||||||||||||    
T  39428509 tgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgctttattctg-ttacaattcgattttccttca 39428590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 25804596 - 25804532
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||| |||||||||||||||||    
T  25804596 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaa--tttttccgctgcttattctgt 25804532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 32993 - 33049
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  32993 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 33049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 20942119 - 20942206
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| ||| ||||||||||||||   | | |||| || ||||||||| || || ||||||||||||||    
T  20942119 gattcatgtgtaattcgtaatgatccaaagaaagaaaatcgaattatatttccgttgtttattctgtattaaaatcgattttccttca 20942206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 23547017 - 23547073
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  23547017 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 23547073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 24932513 - 24932457
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  24932513 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 24932457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 22942308 - 22942344
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaa 51  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22942308 gattcatgtgtaattcgtaatgatccaaggaaagaaa 22942344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 5098670 - 5098710
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatc 66  Q
    |||||||||| || ||||||||||||||||| |||||||||    
T  5098670 aattcgtaataatccaaggaaagaaaatcgacaattttatc 5098710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 24228444 - 24228356
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttcaa 103  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24228444 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgtattcgattttccttcaa 24228356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 32739235 - 32739151
Alignment:
Q  16 attcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgc-ttattctgttttgaattcgattttcctt 100  Q
    |||| |||||||||||| |||||  |||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||    
T  32739235 attcttgtgtaattcgtgatgatttaaggaaagaaaatcgaaaattttatccgctgctttattct-atttgaattcgattttcctt 32739151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 24249240 - 24249184
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  24249240 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 24249184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 59
Target Start/End: Complemental strand, 24761960 - 24761927
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaa 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  24761960 aattcgtaatgatccaaggaaagaaaatcgaaaa 24761927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 19617490 - 19617534
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa 59  Q
    |||||||||  ||||||||||||| ||||||||||||||| ||||    
T  19617490 gattcatgtcaaattcgtaatgatccaaggaaagaaaatcaaaaa 19617534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 34129659 - 34129747
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34129659 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttca 34129747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 47166083 - 47165996
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  47166083 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatcccctgcttattctattttgaattcgattttccttca 47165996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 18258347 - 18258259
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  18258347 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgatttttcttca 18258259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 28131616 - 28131704
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgc-ttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28131616 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgctttattctgttttgaatttgattttccttca 28131704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 19231955 - 19232052
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcg-aaaattttatccgctgcttattctgttttgaattcgattttccttcaattttatgg 111  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| | ||||||    
T  19231955 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgatctgaattcgattttccttcactgttatgg 19232052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 10666280 - 10666192
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaatttt-atccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| ||||||||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||    
T  10666280 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcaaaattttttattcgctgcttattctgttttgaattcgattttccttca 10666192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 41680271 - 41680197
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcg-aaaattttatccgctgcttattctgttttgaat 88  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  41680271 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttctgaat 41680197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 8466083 - 8466169
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttg-aattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||| ||||  ||| |||||||||||||||||  || || ||||||||||||||    
T  8466083 gattcatgtgtaattcgtaatgattcaaggaaagaaaattgaaa--tttttccgctgcttattctgtaatgtaaatcgattttccttca 8466169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 12188823 - 12188767
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  12188823 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 12188767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 18138544 - 18138487
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttt 83  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||||||||||||    
T  18138544 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgttt 18138487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 19860212 - 19860268
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||    
T  19860212 aattcgtaatgatccaaggaaagtaaatcgaatattttattccgctgcttattctgt 19860268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 48807723 - 48807667
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  48807723 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 48807667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 2205646 - 2205700
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||    
T  2205646 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctg 2205700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 15730848 - 15730904
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  || |||||||||||||||    
T  15730848 aattcgtaatgatccaaggaaagtaaatcgaaattttattctgctgcttattctgtt 15730904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 33317944 - 33318032
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33317944 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgttttgaattcgattttccttca 33318032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 5754242 - 5754155
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  5754242 gattcatgtgtaattcgtaatgatccaaggaaagaaaattgaaatttttatccgctgcttattctgttttgaattcgattttccttca 5754155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 8613993 - 8614080
Alignment:
Q  16 attcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8613993 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttttatccgctgcttattctgttttgaattcgattttccttca 8614080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 14075573 - 14075660
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14075573 gattcatttgtaattcgtaatgatccaaggaaagaaaatctaaaattttatccgctgcttattctgttttgaattcgattttccttca 14075660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 18019039 - 18018953
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttg-aattcgattttccttca 102  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||||| |||||||||||||||||  || || ||||||||||||||    
T  18019039 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcg--aattttttccgctgcttattctgtaatgtaaatcgattttccttca 18018953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 27507555 - 27507500
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||    
T  27507555 aattcgtaatgatccaaggaaagtaaatcgaaattttaatccgctgcttattctgt 27507500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 27524769 - 27524714
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||    
T  27524769 aattcgtaatgatccaaggaaagtaaatcgaaattttaatccgctgcttattctgt 27524714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 11250653 - 11250710
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||    
T  11250653 aattcgtaatgatccaaggaaagtaaatcgaaatttttattccgctgcttattctgtt 11250710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 10358301 - 10358254
Alignment:
Q  17 ttcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaatttta 64  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  10358301 ttcatgtcgaattcgtaatgatccaaggaaagaaaatcgaaaatttta 10358254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 1585313 - 1585257
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  || |||||||||||||||    
T  1585313 aattcgtaatgatccaaggaaagtaaatcgaaattttattctgctgcttattctgtt 1585257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 16790157 - 16790212
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||| |||  || ||||||||||||||    
T  16790157 aattcgtaatgatccaaggaaagtaaatcgaaattttattctgctgcttattctgt 16790212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 21996868 - 21996917
Alignment:
Q  16 attcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttat 65  Q
    ||||||||  ||||| ||||||| ||||||| ||||||||||||||||||    
T  21996868 attcatgtcaaattcataatgatccaaggaatgaaaatcgaaaattttat 21996917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 22859096 - 22859044
Alignment:
Q  25 taattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    |||||||||||||| ||||||||| ||||||||   ||| ||||||||||||||||    
T  22859096 taattcgtaatgatccaaggaaagtaaatcgaa---tttttccgctgcttattctg 22859044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 28089214 - 28089302
Alignment:
Q  16 attcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttccttcaa 103  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28089214 attcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaaattttatccgctgcttattctgttttgaattcgattttccttcaa 28089302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 15316399 - 15316312
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  15316399 gattcatgtgtaattcgtaatgatccaaggaaagaaaattgaaaatcttatccgttgcttattctgttttgaattcgattttccttca 15316312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 25977942 - 25977856
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaa-ttttatccgctgcttattctgttttgaattcgattttcctt 100  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||    
T  25977942 gattcatgtgtaattcgtaatgatctaaggaaagaaaatcgaaaaattttacctgctgcttattctgttttgaattcgattttcctt 25977856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 15845741 - 15845655
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||| ||||||||||||| |||||||||||||||| |||| || |||||||||||||||||  |||| ||||||||||||||    
T  15845741 gattcatgtgcaattcgtaatgatccaaggaaagaaaatcg-aaatattttccgctgcttattctgtaatgaaatcgattttccttca 15845655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 21035329 - 21035416
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttcaa 103  Q
    |||||||||||||||| ||||||| |||||||||||||||| || | || ||||||||||||||||| || || |||||||||||||||    
T  21035329 gattcatgtgtaattcataatgatccaaggaaagaaaatcg-aattattttccgctgcttattctgtattaaaatcgattttccttcaa 21035416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 13330234 - 13330302
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttt 83  Q
    |||||||||||||||||||||||| |||||||||||||||||||   || ||| |||||||||||||||    
T  13330234 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaataattttcccctgcttattctgttt 13330302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 21399879 - 21399944
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    |||||||||||||||||||||||| |||||||||||||||| || | || |||||||||||||||||    
T  21399879 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aattattttccgctgcttattctgt 21399944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 55428119 - 55428176
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttt 83  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||||||||||||    
T  55428119 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgttt 55428176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 12300992 - 12301048
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  12300992 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 12301048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 12332293 - 12332349
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  12332293 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 12332349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 20146762 - 20146708
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    ||||||||||||| |||||| || ||||||||| |||  ||||||||||||||||    
T  20146762 aattcgtaatgatccaaggagagtaaatcgaaattttattccgctgcttattctg 20146708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 15651620 - 15651535
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttcctt 100  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  15651620 gattcatgtataattcgtaatgatccaaggaaagaaaatcgaaaattttatccgctgtttattctgttttgaatttgattttcctt 15651535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 4547146 - 4547233
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaa-attttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||  |||||| ||||||||||||| || || ||||||||||||||||    
T  4547146 gattcatgtgtaattcgtaatgatcaaaggaaagaaaattgaaattttttattcgctgcttattctattatg-attcgattttccttca 4547233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 15462598 - 15462684
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt-tttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||| ||||||| |||| || |||||||||||||||||  ||||| ||||||||||||||    
T  15462598 gattcatgtgtaattcgtaatgatccaaggaaaaaaaatcg-aaatattttccgctgcttattctgtaattgaa-tcgattttccttca 15462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 28916987 - 28916923
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    |||||||||||| ||||||||||| |||||||||||||||||||  ||| |||||||||||||||||    
T  28916987 gattcatgtgtagttcgtaatgatccaaggaaagaaaatcgaaa--tttttccgctgcttattctgt 28916923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 34976606 - 34976690
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttc 101  Q
    |||||||||||||||||||||||| ||||||| ||||||| || ||||| || ||||||||||||||| | || |||||||||||||    
T  34976606 gattcatgtgtaattcgtaatgatccaaggaaggaaaatcaaatatttt-tctgctgcttattctgttat-aaatcgattttccttc 34976690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 2678107 - 2678163
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  2678107 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 2678163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 15821786 - 15821842
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  15821786 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 15821842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 26532708 - 26532764
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  26532708 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 26532764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 3356125 - 3356069
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  3356125 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 3356069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 4675157 - 4675101
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  4675157 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 4675101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 18164257 - 18164313
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  18164257 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 18164313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 20245033 - 20245089
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  20245033 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 20245089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 18110250 - 18110195
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||||||||||    
T  18110250 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgt 18110195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 15816115 - 15816169
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||    
T  15816115 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctg 15816169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 11483016 - 11482960
Alignment:
Q  23 tgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    |||| ||||||||||| ||||||||||||||||||   ||| ||||||||||||||||||    
T  11483016 tgtagttcgtaatgatccaaggaaagaaaatcgaa---tttttccgctgcttattctgtt 11482960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 5871512 - 5871567
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||| ||||||    
T  5871512 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttgttctgt 5871567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 17299162 - 17299106
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||  |||  | ||||||||||||||||    
T  17299162 aattcgtaatgatccaaggaaagtaaatcgaatttttatttcgctgcttattctgtt 17299106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 38817731 - 38817782
Alignment:
Q  25 taattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttatt 77  Q
    |||||||||||||| ||||||||| |||||| || |||| |||||||||||||    
T  38817731 taattcgtaatgatccaaggaaagtaaatcg-aatttttttccgctgcttatt 38817782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 38788 - 38702
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  38788 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcgaaaatttt-tccgctgcttattctgtaatgaaatcgattttccttca 38702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 128577 - 128665
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttcaat 104  Q
    ||||||||| |||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||||| | || ||||||||||||||||    
T  128577 gattcatgtctaattcgtaatgatccaaggagagaaaatcg-aaattttattcgctgcttattctgttgtaaactcgattttccttcaat 128665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 28133934 - 28133846
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttg-aattcgattttccttcaa 103  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||  || || |||||||||||||||    
T  28133934 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aaattttttccgctgcttattctgtaatgtaaatcgattttccttcaa 28133846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 22613569 - 22613655
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtttt-gaattcgattttccttca 102  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||| | ||||||||||||||||||||  || ||||||||||||||    
T  22613569 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcg--aattatttccgctgcttattctgttttaaaaatcgattttccttca 22613655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 43801582 - 43801496
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||| || | || ||||||||||||||||| |  || ||||||||||||||    
T  43801582 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aattattttccgctgcttattctgtatgaaaatcgattttccttca 43801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 19705691 - 19705605
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttg-aattcgattttccttca 102  Q
    ||||||||||||||| |||||||| |||||||||||||||||||  ||| |||||||||||||||||  || || ||||||||||||||    
T  19705691 gattcatgtgtaatttgtaatgatccaaggaaagaaaatcgaaa--tttttccgctgcttattctgtaatgtaaatcgattttccttca 19705605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 28145418 - 28145331
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttg-aattcgattttccttca 102  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||  || || ||||||||||||||    
T  28145418 gatttatgtgtaattcgtaatgatccaaggaaagaaaatcg-aaattttttgcgctgcttattctgtaatgtaaatcgattttccttca 28145331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 35936403 - 35936466
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattct 79  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||    
T  35936403 gattcatgtgtaattcgtaatgatccaaggaaaaaaaatcgaaaa-tttatccgctggttattct 35936466  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 14482985 - 14483042
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttt 83  Q
    ||||||||||||| ||||||||| ||||||||| |||  |||||||||||||||||||    
T  14482985 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgttt 14483042  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 47666699 - 47666616
Alignment:
Q  20 atgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt--tttg-aattcgattttccttcaa 103  Q
    ||||||| ||||||||||| ||||||||||||||||||   ||| |||||||||||||||||  |||| || |||||||||||||||    
T  47666699 atgtgtagttcgtaatgatccaaggaaagaaaatcgaa---tttttccgctgcttattctgtaatttgaaaatcgattttccttcaa 47666616  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 20390448 - 20390392
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  20390448 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 20390392  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 20778853 - 20778797
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||    
T  20778853 aattcgtaatgatccaaggaaagtaaatcgagaattttattccgctgcttattctgt 20778797  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 22239932 - 22239876
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  22239932 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 22239876  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 22669466 - 22669411
Alignment:
Q  25 taattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    |||||||||||||| ||||||||| ||||||||  |||| ||||||||||||||||    
T  22669466 taattcgtaatgatccaaggaaagtaaatcgaattttttttccgctgcttattctg 22669411  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 9457210 - 9457267
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttt 83  Q
    ||||||||||||| ||||||||| ||||||||| ||   |||||||||||||||||||    
T  9457210 aattcgtaatgatccaaggaaagtaaatcgaaatttaattccgctgcttattctgttt 9457267  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 9461307 - 9461364
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttt 83  Q
    ||||||||||||| ||||||||| ||||||||| ||   |||||||||||||||||||    
T  9461307 aattcgtaatgatccaaggaaagtaaatcgaaatttaattccgctgcttattctgttt 9461364  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 33262904 - 33262848
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| |||||||||  ||  ||||||||||||||||||    
T  33262904 aattcgtaatgatccaaggaaagtaaatcgaaatgttattccgctgcttattctgtt 33262848  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 33283063 - 33283007
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| |||||||||  ||  ||||||||||||||||||    
T  33283063 aattcgtaatgatccaaggaaagtaaatcgaaatgttattccgctgcttattctgtt 33283007  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 42816197 - 42816143
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    ||||||||||||| |||||| || ||||||||| |||  ||||||||||||||||    
T  42816197 aattcgtaatgatccaaggagagtaaatcgaaattttattccgctgcttattctg 42816143  T

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Target: scaffold0112 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 1275 - 1362
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttg--aattcgattttccttca 102  Q
    |||||||||||||||||||||||| ||||||||||||||||  |||| | |||||||||||||||||||||  || ||||||||||||||    
T  1275 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcg--aattatttccgctgcttattctgttttgtaaaatcgattttccttca 1362  T

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Target: scaffold0686 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 7731 - 7645
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    |||||||||||||||||||||||| |||||||||||||||| || | || ||||||||||||||| | || || ||||||||||||||    
T  7731 gattcatgtgtaattcgtaatgatccaaggaaagaaaatcg-aattattttccgctgcttattctatattaaaatcgattttccttca 7645  T

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Target: scaffold0389 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1246 - 1314
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtttt 84  Q
    |||||||||||||||||||||||| || |||| ||||||||||| | || ||||||||||||||||||||    
T  1246 gattcatgtgtaattcgtaatgatcca-ggaaggaaaatcgaaattattttccgctgcttattctgtttt 1314  T

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Target: scaffold1849 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1849
Description:

Target: scaffold1849; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 207 - 263
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  207 aattcgtaatgatccaaggaaagtaaatcgaaaattttattccgctgcttattctgt 263  T

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Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 302 - 388
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt--tttgaattcgattttccttca 102  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||| ||||   |||||||||||||||  || ||| ||||||||||||||    
T  302 gattcacgtgtagttcgtaatgatccaaggaaagaaaatcgaaattttt---cgctgcttattctgtaattagaaatcgattttccttca 388  T

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Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 197266 - 197208
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtttt 84  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||||    
T  197266 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtttt 197208  T

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Target: scaffold0264 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 2884 - 2828
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaatttta-tccgctgcttattctgt 81  Q
    ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||    
T  2884 aattcgtaatgatccaaggaaagtaaatcgaaaattttattctgctgcttattctgt 2828  T

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Target: scaffold0193 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 32360 - 32304
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  32360 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 32304  T

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Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 73408 - 73322
Alignment:
Q  20 atgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgt--tttgaattcgattttccttcaatttt 107  Q
    ||||||| ||||||||||| ||||||| ||||||||||   ||| |||||| ||||||||||  |||||| |||||||||||||| ||||    
T  73408 atgtgtagttcgtaatgatccaaggaatgaaaatcgaa---tttttccgctacttattctgtaatttgaaatcgattttccttcactttt 73322  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 18670 - 18614
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgtt 82  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||||||||||||    
T  18670 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgcttattctgtt 18614  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 137913 - 137827
Alignment:
Q  15 gattcatgtgtaattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctgttttgaattcgattttccttca 102  Q
    ||||| ||||||||||   ||||| |||||||||||||||| |||| || ||||||||||||||| |  |||| ||||||||||||||    
T  137913 gattcttgtgtaattcaatatgatccaaggaaagaaaatcg-aaatattttccgctgcttattctataatgaaatcgattttccttca 137827  T

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Target: scaffold0028 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 120824 - 120878
Alignment:
Q  26 aattcgtaatgatacaaggaaagaaaatcgaaaattttatccgctgcttattctg 80  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||||||| ||||||    
T  120824 aattcgtaatgatccaaggaaagtaaatcgaaattttattccgctgctcattctg 120878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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