View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_high_28 (Length: 315)
Name: NF16543_high_28
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 35108684 - 35108859
Alignment:
| Q |
20 |
catgatggtgctcctgctacaatctttattgccaaagttccaactaagtttcagtgtaatgacttacttttgtgttcaaccgtgatttccttgattaatt |
119 |
Q |
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| T |
35108684 |
catgatggagctcctgctacaatctttattgccaaagttccaactaagtttcagtataatgacttacttttgtgttcaaccgtgatttccttgattaatt |
35108783 |
T |
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| Q |
120 |
aggtattaaatttttgcttaaactttcatcaatttattgggttatgtttatcagt--tatgtttccatatttcact |
193 |
Q |
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| T |
35108784 |
aggtattaaattttttcttaaactttcatcaatttattgggttatgtttatcagttatatgtttccatatttcact |
35108859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 35109134 - 35109243
Alignment:
| Q |
196 |
ttcatgtgtagagatgaagaaagagtctctcatgaggtctctgagacaagaaaagagnnnnnnngagttgactgaagcatatgtgcctgaattcggaatg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
35109134 |
ttcatgtgtagagatgaagaaagagtctctcatgagg--tctgagacaagaaaagagaaaaaaagagttgactgaagcatatgtgcctggattcggaatg |
35109231 |
T |
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| Q |
296 |
tgtacctttgct |
307 |
Q |
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| T |
35109232 |
tgtaccattgct |
35109243 |
T |
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