View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16543_high_3 (Length: 739)
Name: NF16543_high_3
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_3 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 650; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 23 - 739
Target Start/End: Original strand, 13160081 - 13160797
Alignment:
| Q |
23 |
ataaactttataccattttgatgataaaagnnnnnnnnctattgatatgatcatatacnnnnnnnnnaagaaattacgatcatatacttaattaactgtt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
13160081 |
ataaactttataccattttgatgataaaagaaaaaaaactattgatatgatcatatgctttttttttaagaaattacgatcatatacttaattaactgtt |
13160180 |
T |
|
| Q |
123 |
ttttatcgtatcagatgctcaaataggaatatgttatggtatgatgggaaacaatctaccaccggcaaacgaggttataaatctctacaaagcaaacaac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160181 |
ttttatcgtatcagatgctcaaataggaatatgttatggtatgatgggaaacaatctaccaccggcaaacgaggttataaatctctacaaagcaaacaac |
13160280 |
T |
|
| Q |
223 |
attaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgccaaattccgtccttc |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13160281 |
attaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgccaaattccgaccttc |
13160380 |
T |
|
| Q |
323 |
aaaccctagccaccaactccgataatgcacgtcaatgggtacagagaaatgtattgaacttctggcctagtgtcaaaattaagtatattgcagttggtaa |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13160381 |
aaaccctagccaccaactccgataatgcacgtcaatgggtacaaagaaatgtattgaacttctggcctagtgtcaaaatcaagtatattgcagttggtaa |
13160480 |
T |
|
| Q |
423 |
tgaagtgagtccagttggaggctcttcttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgat |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160481 |
tgaagtgagtccagttggaggctcttcttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgat |
13160580 |
T |
|
| Q |
523 |
caaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatc |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160581 |
caaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatc |
13160680 |
T |
|
| Q |
623 |
ctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttagccatgttggtaacccgcgcgatatatctcttcctta |
722 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13160681 |
ctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttagccatgttggtaacccgcgcgatatatctcttcctta |
13160780 |
T |
|
| Q |
723 |
tgctcttttcacttcac |
739 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13160781 |
tgctcttttcacttcac |
13160797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 210 - 687
Target Start/End: Complemental strand, 13152970 - 13152493
Alignment:
| Q |
210 |
caaagcaaacaacattaagagaatgagactctacgatcctaatcaagctgctctaaatgcattaagaaattcaggcattgaactcattcttggtgtgcca |
309 |
Q |
| |
|
|||| |||||||||| || |||||||| || || ||||| || ||||||||||| | ||| | |||||||| |||||||| || || | ||||||||| |
|
|
| T |
13152970 |
caaatcaaacaacatcaaaagaatgaggctatatgatccaaaccaagctgctcttgaagcacttagaaattctggcattgagcttatgttaggtgtgcca |
13152871 |
T |
|
| Q |
310 |
aattccgtccttcaaaccctagccaccaactccgataatgcacgtcaatgggtacagagaaatgtattgaacttctggcctagtgtcaaaattaagtata |
409 |
Q |
| |
|
||||| | ||||||| | | || |||||| || | |||| |||||||||||| | ||||||| | ||||||| |||||||||||||| || || | |
|
|
| T |
13152870 |
aattctgatcttcaaaacattgctaccaacaatgacattgcaattcaatgggtacaaaaaaatgtactaaacttctaccctagtgtcaaaatcaaataca |
13152771 |
T |
|
| Q |
410 |
ttgcagttggtaatgaagtgagtccagttggaggctcttcttggctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctca |
509 |
Q |
| |
|
| || |||||||||||||| | |||||||| ||||||||| | || ||| |||||| || || | |||||| ||||||||||| |||||||| | |
|
|
| T |
13152770 |
tcgcggttggtaatgaagttaacccagttggtggctcttctcaattcgcaaaatttgttcttccggcaatccaaaacatatatcaagcaataagagcgaa |
13152671 |
T |
|
| Q |
510 |
aggtcttcatgatcaaatcaaggtttcaaccgctattgacatgacccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttagg |
609 |
Q |
| |
|
| ||| || |||||||||||||||||||| ||||||||||||||| | || |||| ||| | ||| || ||||||||||| ||||||| ||||| ||| |
|
|
| T |
13152670 |
aaatctgcacgatcaaatcaaggtttcaacggctattgacatgaccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgagg |
13152571 |
T |
|
| Q |
610 |
tcatacctagatcctttcattggatacttggtatatgcaggtgcacctttacttgtcaatgtttacccttattttagc |
687 |
Q |
| |
|
||||| | ||||| | || || ||||| ||||||||| |||||||||| ||| ||| ||||| ||||||||||| |
|
|
| T |
13152570 |
tcatatttggatccaattataggctacttagtatatgcaaatgcacctttatttgcaaatatttactcttattttagc |
13152493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 354 - 687
Target Start/End: Complemental strand, 13146062 - 13145729
Alignment:
| Q |
354 |
tcaatgggtacagagaaatgtattgaacttctggcctagtgtcaaaattaagtatattgcagttggtaatgaagtgagtccagttggaggctcttcttgg |
453 |
Q |
| |
|
|||||||||||| | ||||||| | ||||||| |||||||| ||||| || || || || || ||||||||||| | ||||||||| ||||||||| |
|
|
| T |
13146062 |
tcaatgggtacaaaaaaatgtactaaacttctaccctagtgttaaaatcaaatacatcgcggtcggtaatgaagttaatccagttggcggctcttctcaa |
13145963 |
T |
|
| Q |
454 |
ctagcccaatatgttctacctgccacccaaaatatatatcaagcgataagagctcaaggtcttcatgatcaaatcaaggtttcaaccgctattgacatga |
553 |
Q |
| |
|
| || ||| || || || || | |||||| ||||| ||||| |||||||| || | |||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
13145962 |
tttgcaaaattcgtccttccggcaatccaaaacatataccaagcaataagagcgaaaaattttcaagatcaaatcaaggtttcaacggctattgacatga |
13145863 |
T |
|
| Q |
554 |
cccttattggaaattcattccctccatctaaaggttcttttagaaatgatgttaggtcatacctagatcctttcattggatacttggtatatgcaggtgc |
653 |
Q |
| |
|
|| | || |||| ||| | ||| || ||||||||||| ||||||| ||||| |||||||| | ||||| | || || ||||| ||||||||| ||| |
|
|
| T |
13145862 |
ccatgataggaacttcgtacccgccgtctaaaggttcatttagaagcgatgtgaggtcatatttggatccaattataggctacttagtatatgcaaatgc |
13145763 |
T |
|
| Q |
654 |
acctttacttgtcaatgtttacccttattttagc |
687 |
Q |
| |
|
||||||| ||| ||| ||||| ||||||||||| |
|
|
| T |
13145762 |
acctttatttgcaaatatttactcttattttagc |
13145729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University