View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_high_30 (Length: 307)
Name: NF16543_high_30
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 34873608 - 34873885
Alignment:
| Q |
18 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactattgttttcattttgcaggaaatgatgaaaagca |
115 |
Q |
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| T |
34873608 |
agacaatgaaaaatgcatttatatatcagttgaggaaagaaacatcatagattgcaagacttaactggtgttttcattttgcaggaaatgatgaaaagca |
34873707 |
T |
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| Q |
116 |
accatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggat |
215 |
Q |
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| T |
34873708 |
accatcgcaacaaactcttgagatgccttaagggtgcttgcaggttctggtgaagtgaaggaaatggacttaacggtaacggttgatgagaaaagaggat |
34873807 |
T |
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| Q |
216 |
tgtgcagtggtccttcatgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagcttgt |
293 |
Q |
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| T |
34873808 |
tgtgcagtggtccttcatgggttgtttggtattcgggaagagggtatgagtttttttgacatagttcttgaagcttgt |
34873885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 34872016 - 34871741
Alignment:
| Q |
18 |
agacaatgaaaaa--catttataaatcagttgaggaaagaaacatcatagattgcaacacttaactattgttttcattttgcaggaaatgatgaaaagca |
115 |
Q |
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| T |
34872016 |
agacaatgaaaaatgcatttataaatcagttgaggaaagaaacatcatggattgcaagacttaactgttgttttcattttgcaggaaatgatgaaaagca |
34871917 |
T |
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| Q |
116 |
accatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttgatgagaaaagaggat |
215 |
Q |
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| T |
34871916 |
accatcgcagcaaactcttgagatgccttaagggtgcttgctggttttggtgaagtgaaggaaatagacttaacggtaacggttgatgaaaaaagaggat |
34871817 |
T |
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| Q |
216 |
tgtgcagtggtccttcatgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagctt |
291 |
Q |
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|||||||||||||||||||||||||||||||||| |||| || || ||| ||||||||||||||||||| |
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| T |
34871816 |
tgtgcagtggtccttcatgggttgtttggtatttgggaagtgggtaagagtttttttgacatagttcttgaagctt |
34871741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 101 - 292
Target Start/End: Complemental strand, 9911247 - 9911056
Alignment:
| Q |
101 |
aaatgatgaaaagcaaccatcgcaacaaattcttgagatgccttaagggtgcttgctagttctggtgaagtgaaggaaatggacttaacggtaacagttg |
200 |
Q |
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|||||||||||||||||||| ||| || | |||||||| ||||| ||||| |||| |||| || |||| |||||||||||| ||||| ||||| |||| |
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| T |
9911247 |
aaatgatgaaaagcaaccatggcagcagaatcttgagacagcttaatggtgcgtgctggttcaggagaagagaaggaaatggagttaacagtaacggttg |
9911148 |
T |
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| Q |
201 |
atgagaaaagaggattgtgcagtggtccttcatgggttgtttggtattttagaagaggatatgagnnnnnnngacatagttcttgaagcttg |
292 |
Q |
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| T |
9911147 |
ttgagaaacgagaattgtgtggtggtccttcacgggttgtttggtattcgggaagagggtatgaatttttttgacatagttcttgaagcttg |
9911056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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