View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_high_36 (Length: 258)
Name: NF16543_high_36
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 44592813 - 44593050
Alignment:
| Q |
11 |
cataggaagaatcacatgtctctaacactccatcagtgtagcgtggactttcacaatccaatatgtcactccttgctgaactaatatcttcaagtttgnn |
110 |
Q |
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| T |
44592813 |
cataggaagaatcacatgtctctaacactccatcagtgtagcgtggactttcacaatccaatatgtcactccttgctgaactaatatcttcaagtttgtt |
44592912 |
T |
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| Q |
111 |
nnnnnnnnnnnnnnnn---gaaacctcaacaattgacaatttggatccttcaccctcagaaactgaatcaaccaaaggcttattaattgttggttccttc |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44592913 |
attattattattattattagaagcctcaacaattgacaatttggatccttcaccctcagaaactgaatcaaccaaaggcttattaattgttggttccttc |
44593012 |
T |
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| Q |
208 |
aataattcctttgtttcactttcaccttgtttgaattt |
245 |
Q |
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| T |
44593013 |
aagaattcctttgtttcactttcaccttgtttgaattt |
44593050 |
T |
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