View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_high_40 (Length: 245)
Name: NF16543_high_40
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 15215392 - 15215603
Alignment:
| Q |
13 |
caaaggaattaataataggttaagacacccaatcaattttatatcatgatttttatgcaaagaaggcaaagcaattttacaaagttaataattctgttca |
112 |
Q |
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| T |
15215392 |
caaaggaattaataataggttaagacacccaatcaattttatatcatgatttttatgcaaaggaggcaa-gcaattttacaaagttaataattatgttca |
15215490 |
T |
|
| Q |
113 |
cgccacctacaaagttgttgattaaagaaccaaacacataaaagaccatattactacttgacaatttggctgagatatcaacactaattaaaaacccttt |
212 |
Q |
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| T |
15215491 |
cgccacctacaaagttgttgattaaagaaccaaacacataaaagaccatattactacctgacaatttggctaagatatcaacactaattaaaaacccttt |
15215590 |
T |
|
| Q |
213 |
tgctgagaagcgg |
225 |
Q |
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||||||||||||| |
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| T |
15215591 |
tgctgagaagcgg |
15215603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 26908148 - 26908254
Alignment:
| Q |
13 |
caaaggaattaataataggttaagacacccaatcaattttatatcatgatttttatgcaaagaaggcaaagcaattttacaaagttaataattctgttca |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||| |||||||| |
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| T |
26908148 |
caaaggaattaataataggtcaagacacccaatcaattttatataatgatttttatgcaagggaggc-aagcaattttacaaagttaataactctgttca |
26908246 |
T |
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| Q |
113 |
cgccacct |
120 |
Q |
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|||||||| |
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| T |
26908247 |
cgccacct |
26908254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 24066044 - 24065931
Alignment:
| Q |
17 |
ggaattaataataggttaagacacccaatcaattttatatcatga-tttttatgcaaagaaggcaaagcaattttacaaagttaataattctgttcacgc |
115 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| |||| ||||||||| ||| |||| ||||||| |||||| |
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| T |
24066044 |
ggaattaataataggttaagtcacccaatcaattatatatcctgattttttatgcaaaggaggc-aagcaatttggcaattttaagaattctgctcacgc |
24065946 |
T |
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| Q |
116 |
cacctacaaagttgt |
130 |
Q |
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|||||||| ||||| |
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| T |
24065945 |
tacctacaatgttgt |
24065931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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