View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16543_high_5 (Length: 712)
Name: NF16543_high_5
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 131 - 638
Target Start/End: Complemental strand, 13317851 - 13317346
Alignment:
| Q |
131 |
gcccttttacaatgtaaatgtgtatatatctaggtcatgaaatcctctnnnnnnntgtagatcatgaataatgagtaactgtaaaaattataaagtcatt |
230 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
13317851 |
gcccttttacaatgtaaatgt--atgtatctaggtcatgaaatcctctaaaaaaatgtagatcatgaataatgagcaactgtaaaaattataaaatcatt |
13317754 |
T |
|
| Q |
231 |
tatttattggacacatggaaatgaaagtaaaacatggtcaaacgtgaattcacacaatattctattctatgttactataatttgtatgatatgactgcta |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13317753 |
tatttattggacacatggaaatgaaagtaaaacatggtcaaacgtgaattcacacaatattctattctatgttactataatttgtatgatatgactgcta |
13317654 |
T |
|
| Q |
331 |
ccagaaactagacaaccaatataatttcagaaagcctagatgcatgtatgatagacacaattgaagtactaactacatggtacaaacatgatg-nnnnnn |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13317653 |
ccagaaactagacaaccaatataatttcagatcgcctagatgcatgtatgatagacacaattgaagtactaagtacatggtacaaacatgatgaaaaaaa |
13317554 |
T |
|
| Q |
430 |
ngagtacgttggtacaagtaatgtgcacaattggaattccacatgtgcatgtatctttttctcctttaattttcgttatcatttaaacattgtgatcagg |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13317553 |
agagtacgttggtacaagtaatgtgcacaattggaattccacatgtgcatgtatctttttctcctttaattttcgttaccatttaaacattgtgatcagg |
13317454 |
T |
|
| Q |
530 |
atttgaacattagttcgccacattataagagattaaaatgtgtttattgtagtttcgtcatttctttttagttgcataatatataacgggtttatattta |
629 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |
|
|
| T |
13317453 |
atttgaacattagttcgccacattacaagagattaaaatgtgtttattgtagtttcgtcatttctttttagtcgcataatat-taacgggtgtatattta |
13317355 |
T |
|
| Q |
630 |
atgtgaaaa |
638 |
Q |
| |
|
||||||||| |
|
|
| T |
13317354 |
atgtgaaaa |
13317346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 629 - 694
Target Start/End: Complemental strand, 13317318 - 13317253
Alignment:
| Q |
629 |
aatgtgaaaaatatttcatgtatctatatggttaaataaataaaccagatgagttgaggttaggtt |
694 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13317318 |
aatgtgaaaagtatttcatgtatctatatggttaaataaataaaccagatgagttgaggttaggtt |
13317253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 13317969 - 13317896
Alignment:
| Q |
13 |
aatatcttcatgctaaaatctctcacccttttttcttaattt-aaaaaagctttatagacttattgtgaaagctg |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
13317969 |
aatatcttcatgctaaaatctctcacccttttt-cttaattttaaaaaagctttataaacttattgtgaaagctg |
13317896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University