View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16543_low_1 (Length: 1210)
Name: NF16543_low_1
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 1078; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1078; E-Value: 0
Query Start/End: Original strand, 18 - 1200
Target Start/End: Complemental strand, 38606147 - 38604952
Alignment:
| Q |
18 |
caatttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatcttgttcataaggtgggttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38606147 |
caatttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatcttgttcataaggtgggttt |
38606048 |
T |
|
| Q |
118 |
ggaaaaattataagtgcctaatcactacccctgttctcgaatcccttgtctcatcaatgtgctcttctgaatc------atctcatcttaaactaaggaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38606047 |
ggaaaaattataagtgcctaatcactacccctgttctcgaatcccttgtctcatcaatgtgctcttctgaatctgaatcatctcatcttaaactaaggaa |
38605948 |
T |
|
| Q |
212 |
aaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcacctcatacaattcttc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38605947 |
gaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaaccggccttcttaacccacccattctcaatcacctcatacaattcttc |
38605848 |
T |
|
| Q |
312 |
tcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttc |
411 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38605847 |
tcaattataggtcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttc |
38605748 |
T |
|
| Q |
412 |
aagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgc---actccaaagatgataatct |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38605747 |
aagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgctgctgctgcactccaaagatgataatcg |
38605648 |
T |
|
| Q |
509 |
tcactcttcttctcaaggttacacttacacttaccttcctccttgtccagatgatgtcactgcatctgaagatttccggatagtaatgacatttcttagt |
608 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38605647 |
tcactcttcttctcaaggctacacttacacttaccttcctccttgtccagacgatgtcactgcatctgaagatttccggatagtgatgacatttcttagt |
38605548 |
T |
|
| Q |
609 |
ggtactcctcctcctctccataattattattacaaatttaatagatgtttcagtttcacatgcttggaaactctgcatcagc-------atcaaccacat |
701 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38605547 |
ggtactcctcctc---tccataattataattacaaatttaatagatgtttcagtttcacatgcttggaaactctgcatcagccatcagcatcaaccacat |
38605451 |
T |
|
| Q |
702 |
tttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctttta |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38605450 |
tttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcatattcttattcactttatcaagtgggctttta |
38605351 |
T |
|
| Q |
802 |
ggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgcgatgttccaactaaatttgatgttgaactaaggcagaatga |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38605350 |
ggagtaattcacatctcatcactacccctgttttggaatctcttgtttcagcaatatgcgatgttccaactaaatttgatgttgaactaaggcagaatga |
38605251 |
T |
|
| Q |
902 |
catactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctagattcatttggatat |
1001 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38605250 |
catactttttctgtgggacttgcttaaacatattggccattccgagactggtcttcttaacacccagattctcaatcaactcctagattcatttggatat |
38605151 |
T |
|
| Q |
1002 |
gtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctc |
1101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38605150 |
gtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctc |
38605051 |
T |
|
| Q |
1102 |
tttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctgatgatg |
1200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38605050 |
tttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctgatgatg |
38604952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 199 - 484
Target Start/End: Complemental strand, 40181480 - 40181191
Alignment:
| Q |
199 |
ttaaactaaggaaaaatgacatacttttt-ctgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcacc |
297 |
Q |
| |
|
||||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||| ||| |||| | | ||||||| || ||||||||| | | |
|
|
| T |
40181480 |
ttaaactaaggaagaaatacatatttttttctgtgggacatgcttaagtatattggccgctatgaaactgactttcttaatgcaaggattctcaataaac |
40181381 |
T |
|
| Q |
298 |
tcatacaattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacata |
397 |
Q |
| |
|
||||| ||| ||||||| |||| |||| |||| ||| | |||||||| |||||||||| ||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
40181380 |
tcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacata |
40181281 |
T |
|
| Q |
398 |
ttactttacacttcaagctctttt---gaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct |
484 |
Q |
| |
|
||||| |||||| ||||||||||| || ||||| ||||||||||||||| ||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
40181280 |
ttactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgctgct |
40181191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 995 - 1200
Target Start/End: Complemental strand, 40180652 - 40180450
Alignment:
| Q |
995 |
tggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactg |
1094 |
Q |
| |
|
||||||| | |||||| |||| ||| ||||||| | |||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
40180652 |
tggatatatttgggacaaagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactg |
40180553 |
T |
|
| Q |
1095 |
gaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctg |
1194 |
Q |
| |
|
||||| ||| | | | | | || |||| ||||| | ||||||||||||||||| || ||||||||||| |||||||| ||||| || |||||||||| |
|
|
| T |
40180552 |
caagctatttgt--ggc-atagattacagtactgatgtactccagcaagccgcttccatatgtcaaaagatggtgcttcaaccagatactctccttcctg |
40180456 |
T |
|
| Q |
1195 |
atgatg |
1200 |
Q |
| |
|
|||||| |
|
|
| T |
40180455 |
atgatg |
40180450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 219 - 407
Target Start/End: Original strand, 41885803 - 41885992
Alignment:
| Q |
219 |
atactttttc-tgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcacctcatacaattcttctcaatt |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||| || ||||||||||| || |||||||||||| | | ||||| ||| | || ||| |||||||||||||| |
|
|
| T |
41885803 |
atactttttcctgtgggatttgcttaagactacaggccattatcagaccggccttcttaacgctcggattctaaataaactaatagaattcttctcaatt |
41885902 |
T |
|
| Q |
318 |
atagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttaca |
407 |
Q |
| |
|
|| ||||||||||| || |||||| || |||||||||| ||||||| |||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
41885903 |
atggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttttcaatgtgagccaaatcaagatacatattactttaca |
41885992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 328 - 416
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
| Q |
328 |
aaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagct |
416 |
Q |
| |
|
|||| ||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
40180635 |
aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct |
40180547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 814 - 983
Target Start/End: Complemental strand, 40180884 - 40180712
Alignment:
| Q |
814 |
atctcatcactacccctgttttggaatcccttgtttcagcaatatgcga---tgttccaactaaatttgatgttgaactaaggcagaatgacatactttt |
910 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| | |||||||| || ||| ||| ||| ||||||| ||||| | |||| || ||||||| |
|
|
| T |
40180884 |
atctcatcactacccctgttctggaatcccttgtattgtcaatatgccccactgctcccactgaatacgatgttgcactaaagaagaaggatatacttta |
40180785 |
T |
|
| Q |
911 |
tctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactc |
983 |
Q |
| |
|
||||||| ||||||| || ||||||||||| | | |||| ||| |||||||||| | |||||||||||||||| |
|
|
| T |
40180784 |
tctgtggaacttgctgaagcatattggccactatcagaccggtattcttaacactcggattctcaatcaactc |
40180712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1032 - 1163
Target Start/End: Complemental strand, 40181330 - 40181199
Alignment:
| Q |
1032 |
gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata |
1131 |
Q |
| |
|
||||||||||| ||||| || ||||| |||||||| ||||||||| ||||| || ||||||| |||||||||| | || ||||| || |||||||||| |
|
|
| T |
40181330 |
gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata |
40181231 |
T |
|
| Q |
1132 |
tgctccagcaagccgcttctatctgtcaaaag |
1163 |
Q |
| |
|
|| |||| ||||| | ||||||| ||||||| |
|
|
| T |
40181230 |
tgatccaccaagcagagtctatctatcaaaag |
40181199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 6e-65; HSPs: 20)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 6e-65
Query Start/End: Original strand, 699 - 1198
Target Start/End: Original strand, 44459952 - 44460457
Alignment:
| Q |
699 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt |
798 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
44459952 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt |
44460051 |
T |
|
| Q |
799 |
---ttaggagtaattc------acatctcatcactacccctgttttggaatcccttgtttcagcaatatg-cgatgttccaactaaatttgatgttgaac |
888 |
Q |
| |
|
| ||||| || | | |||||||||||||||||||| |||||||||||||||||| |||||| || |||||| | | | || || | | |
|
|
| T |
44460052 |
ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgata-atattcatc |
44460150 |
T |
|
| Q |
889 |
taaggcagaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctaga |
988 |
Q |
| |
|
||||| |||| |||||| ||||||||||||| |||||||| ||||||||||| | | |||||| ||||||| |||| ||||||||||||||||||| | |
|
|
| T |
44460151 |
taaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctaca |
44460250 |
T |
|
| Q |
989 |
ttcatttggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatcttt |
1088 |
Q |
| |
|
|| ||||||| ||| | |||||| ||||| | |||| ||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||| | |
|
|
| T |
44460251 |
ctcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccat |
44460350 |
T |
|
| Q |
1089 |
acactggaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctcc |
1188 |
Q |
| |
|
|| ||| ||||| |||| ||| |||| || | |||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
44460351 |
acgctgcaagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatcc |
44460447 |
T |
|
| Q |
1189 |
ttcctgatga |
1198 |
Q |
| |
|
|||||||||| |
|
|
| T |
44460448 |
ttcctgatga |
44460457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 6e-65
Query Start/End: Original strand, 699 - 1198
Target Start/End: Original strand, 44467485 - 44467990
Alignment:
| Q |
699 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggctt |
798 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||| | | ||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |
|
|
| T |
44467485 |
cattttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaagtgggctt |
44467584 |
T |
|
| Q |
799 |
---ttaggagtaattc------acatctcatcactacccctgttttggaatcccttgtttcagcaatatg-cgatgttccaactaaatttgatgttgaac |
888 |
Q |
| |
|
| ||||| || | | |||||||||||||||||||| |||||||||||||||||| |||||| || |||||| | | | || || | | |
|
|
| T |
44467585 |
ggatgaggaggaacacttatcaagatctcatcactacccctgttctggaatcccttgtttcagaaatatgtcgtggttccaccgatgata-atattcatc |
44467683 |
T |
|
| Q |
889 |
taaggcagaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctaga |
988 |
Q |
| |
|
||||| |||| |||||| ||||||||||||| |||||||| ||||||||||| | | |||||| ||||||| |||| ||||||||||||||||||| | |
|
|
| T |
44467684 |
taaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctaca |
44467783 |
T |
|
| Q |
989 |
ttcatttggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatcttt |
1088 |
Q |
| |
|
|| ||||||| ||| | |||||| ||||| | |||| ||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||| | |
|
|
| T |
44467784 |
ctcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccat |
44467883 |
T |
|
| Q |
1089 |
acactggaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctcc |
1188 |
Q |
| |
|
|| ||| ||||| |||| ||| |||| || | |||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
44467884 |
acgctgcaagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatcc |
44467980 |
T |
|
| Q |
1189 |
ttcctgatga |
1198 |
Q |
| |
|
|||||||||| |
|
|
| T |
44467981 |
ttcctgatga |
44467990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 297 - 472
Target Start/End: Original strand, 44459541 - 44459716
Alignment:
| Q |
297 |
ctcatacaattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacat |
396 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||| |
|
|
| T |
44459541 |
ctcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacat |
44459640 |
T |
|
| Q |
397 |
attactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca |
472 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || |||||| || |||| ||||| ||||| ||||||||||||| |
|
|
| T |
44459641 |
attactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca |
44459716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 297 - 472
Target Start/End: Original strand, 44467074 - 44467249
Alignment:
| Q |
297 |
ctcatacaattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacat |
396 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||| |
|
|
| T |
44467074 |
ctcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacat |
44467173 |
T |
|
| Q |
397 |
attactttacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtca |
472 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || |||||| || |||| ||||| ||||| ||||||||||||| |
|
|
| T |
44467174 |
attactttactctgcaagctcttttgaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtca |
44467249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 85; E-Value: 7e-40
Query Start/End: Original strand, 954 - 1196
Target Start/End: Complemental strand, 34502460 - 34502221
Alignment:
| Q |
954 |
cttcttaacacccagattctcaatcaactcctagattcatttggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtct |
1053 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||| |||| ||| || | ||| ||||||||| |||| ||||| | ||||||||||||||||||||| | |
|
|
| T |
34502460 |
cttcttaacacacggattctctatcaactcctacattcccttgcatttatgttggaccaaggaaagattgcacccgaagtttttcataaatttgaggcat |
34502361 |
T |
|
| Q |
1054 |
ttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctat |
1153 |
Q |
| |
|
|||| |||||||| |||| |||| |||| | |||||||||| |||||||||| || ||||| || | |||||||| ||| |||||||||||||| |
|
|
| T |
34502360 |
ttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgatatgacccaccaagccgcttctat |
34502264 |
T |
|
| Q |
1154 |
ctgtcaaaagattgtgcttcatccagaaaccctccttcctgat |
1196 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
34502263 |
ctgtcaaaagatgctgcttcatccagaaaccgtccttcctgat |
34502221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 44459262 - 44459423
Alignment:
| Q |
21 |
tttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatcttgttcataaggtgggtttgga |
120 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||||| ||| || |||||||||| |||||| || |||||| || |||| || |||||||| |
|
|
| T |
44459262 |
tttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttgga |
44459361 |
T |
|
| Q |
121 |
aaaattataagtgcctaatcactacccctgttctcgaatcccttgtctcatcaatgtgctct |
182 |
Q |
| |
|
| ||| | ||| ||| ||||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
44459362 |
agaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctct |
44459423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 44466795 - 44466956
Alignment:
| Q |
21 |
tttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatcttgttcataaggtgggtttgga |
120 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||||| ||| || |||||||||| |||||| || |||||| || |||| || |||||||| |
|
|
| T |
44466795 |
tttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttgga |
44466894 |
T |
|
| Q |
121 |
aaaattataagtgcctaatcactacccctgttctcgaatcccttgtctcatcaatgtgctct |
182 |
Q |
| |
|
| ||| | ||| ||| ||||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
44466895 |
agaataacaaggacctcatcactacccctgttctggaatcccttgtttcatcaatatgctct |
44466956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 204 - 484
Target Start/End: Original strand, 44460150 - 44460430
Alignment:
| Q |
204 |
ctaaggaaaaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcacctcatac |
303 |
Q |
| |
|
|||||||| || |||||| ||||||||||||| ||||||||| |||||||||| ||||| || | |||||||| | | ||||||||||| ||| ||| |
|
|
| T |
44460150 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac |
44460249 |
T |
|
| Q |
304 |
aattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactt |
403 |
Q |
| |
|
| | ||| | | || | | |||| ||| | | ||| ||||||||||||| ||||||| |||||||| ||||| |||||||| |||||| | |
|
|
| T |
44460250 |
actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca |
44460349 |
T |
|
| Q |
404 |
tacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct |
484 |
Q |
| |
|
||| || |||||| |||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
44460350 |
tacgctgcaagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct |
44460430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 204 - 484
Target Start/End: Original strand, 44467683 - 44467963
Alignment:
| Q |
204 |
ctaaggaaaaatgacatactttttctgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcacctcatac |
303 |
Q |
| |
|
|||||||| || |||||| ||||||||||||| ||||||||| |||||||||| ||||| || | |||||||| | | ||||||||||| ||| ||| |
|
|
| T |
44467683 |
ctaaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctac |
44467782 |
T |
|
| Q |
304 |
aattcttctcaattatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactt |
403 |
Q |
| |
|
| | ||| | | || | | |||| ||| | | ||| ||||||||||||| ||||||| |||||||| ||||| |||||||| |||||| | |
|
|
| T |
44467783 |
actcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatcca |
44467882 |
T |
|
| Q |
404 |
tacacttcaagctcttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct |
484 |
Q |
| |
|
||| || |||||| |||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
44467883 |
tacgctgcaagcttttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct |
44467963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 345 - 484
Target Start/End: Complemental strand, 34502385 - 34502246
Alignment:
| Q |
345 |
gaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctcttttgaccacaacgtgtagtgctgata |
444 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||| ||| ||||| ||||||||| |||||||||||| ||||| |||| |||||| |
|
|
| T |
34502385 |
gaagtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctcttttgatcacaagatgtatcactgata |
34502286 |
T |
|
| Q |
445 |
tcatccaccaagcctcttctatctgtcaaaacttgctgct |
484 |
Q |
| |
|
| | |||||||||| |||||||||||||||| ||||||| |
|
|
| T |
34502285 |
tgacccaccaagccgcttctatctgtcaaaagatgctgct |
34502246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 699 - 859
Target Start/End: Complemental strand, 34502698 - 34502528
Alignment:
| Q |
699 |
cattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcac-tttatcaagtgggct |
797 |
Q |
| |
|
|||||| |||||||| |||||||| |||| | |||||||| | | |||||||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
|
|
| T |
34502698 |
cattttgtactcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttatccacttttatgaagtgggct |
34502599 |
T |
|
| Q |
798 |
tttaggag---------taattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatg |
859 |
Q |
| |
|
| ||||| | || ||||||||| ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
34502598 |
tggaggaggaggaacacttataaacatctcattactacccttgttctggaatcccttgtttcagcaatatg |
34502528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 715 - 860
Target Start/End: Original strand, 44459275 - 44459420
Alignment:
| Q |
715 |
ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca |
814 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| |||| || || | || ||| | |
|
|
| T |
44459275 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44459374 |
T |
|
| Q |
815 |
tctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
860 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
44459375 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44459420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 715 - 860
Target Start/End: Original strand, 44466808 - 44466953
Alignment:
| Q |
715 |
ttattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatcaagtgggcttttaggagtaattcaca |
814 |
Q |
| |
|
||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| |||| || || | || ||| | |
|
|
| T |
44466808 |
ttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttggaagaataacaagga |
44466907 |
T |
|
| Q |
815 |
tctcatcactacccctgttttggaatcccttgtttcagcaatatgc |
860 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
44466908 |
cctcatcactacccctgttctggaatcccttgtttcatcaatatgc |
44466953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1012 - 1165
Target Start/End: Original strand, 44459572 - 44459722
Alignment:
| Q |
1012 |
aaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagac |
1111 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||| ||||||||||||||| ||||| ||| ||||| |||||| ||| |||||||||| ||| |
|
|
| T |
44459572 |
aaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctctttt---gac |
44459668 |
T |
|
| Q |
1112 |
aacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagat |
1165 |
Q |
| |
|
|| | || ||| || ||||| |||| ||||| |||||||||||||| ||||| |
|
|
| T |
44459669 |
cacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagat |
44459722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 1012 - 1165
Target Start/End: Original strand, 44467105 - 44467255
Alignment:
| Q |
1012 |
aaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagac |
1111 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||||| ||||||||||||||| ||||| ||| ||||| |||||| ||| |||||||||| ||| |
|
|
| T |
44467105 |
aaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgatacatattactttactctgcaagctctttt---gac |
44467201 |
T |
|
| Q |
1112 |
aacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagat |
1165 |
Q |
| |
|
|| | || ||| || ||||| |||| ||||| |||||||||||||| ||||| |
|
|
| T |
44467202 |
cacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagat |
44467255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 44459446 - 44459490
Alignment:
| Q |
895 |
agaatgacatactttttctgtgggacttgcttaaacatattggcc |
939 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
44459446 |
agaacgacatactttttctgtgggacttgcttaagcgtattggcc |
44459490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 895 - 939
Target Start/End: Original strand, 44466979 - 44467023
Alignment:
| Q |
895 |
agaatgacatactttttctgtgggacttgcttaaacatattggcc |
939 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
44466979 |
agaacgacatactttttctgtgggacttgcttaagcgtattggcc |
44467023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 34502695 - 34502618
Alignment:
| Q |
21 |
tttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatc |
98 |
Q |
| |
|
|||| ||||||||||||| || |||||| |||||| |||||| | ||||||||||||| || ||||| || |||||| |
|
|
| T |
34502695 |
tttgtactcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttatc |
34502618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 44459955 - 44460032
Alignment:
| Q |
21 |
tttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatc |
98 |
Q |
| |
|
|||| ||||||||||||| ||||||| | ||||| |||||| || ||||||||||||| || ||||| || |||||| |
|
|
| T |
44459955 |
tttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatc |
44460032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 44467488 - 44467565
Alignment:
| Q |
21 |
tttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatc |
98 |
Q |
| |
|
|||| ||||||||||||| ||||||| | ||||| |||||| || ||||||||||||| || ||||| || |||||| |
|
|
| T |
44467488 |
tttgtactcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatc |
44467565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 5e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 690 - 1198
Target Start/End: Original strand, 46358821 - 46359327
Alignment:
| Q |
690 |
catcaaccacattttctactcaaaattattgaaacctcctgtcaaactataccagttgaaaccccaaaggtttctcctcataatcttattcactttatca |
789 |
Q |
| |
|
||||||| ||| ||| ||| ||| ||||||||||||| |||||||||| | |||||| ||||||||||| |||||||||||||| ||||||| | |
|
|
| T |
46358821 |
catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa |
46358920 |
T |
|
| Q |
790 |
agtgggcttttaggagtaattcacatctcatcactacccctgttttggaatcccttgtttcagcaatatgc-gatgttccaactaaatttgatgttgaac |
888 |
Q |
| |
|
||| || || | || ||| | |||||||||||||||||| |||||||||||||||||| ||||||| | || | | ||| | | || || | | |
|
|
| T |
46358921 |
agttggtttggaagaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatgccgctggttccactgatgataatattcatc |
46359020 |
T |
|
| Q |
889 |
taaggcagaatgacatactttttctgtgggacttgcttaaacatattggccattctgagactggtcttcttaacacccagattctcaatcaactcctaga |
988 |
Q |
| |
|
||||| |||| |||||| ||||||||||||| |||||||| ||||||||||| | | |||||| ||||||| |||| ||||||||||||||||||| | |
|
|
| T |
46359021 |
taaggaagaacgacatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctaca |
46359120 |
T |
|
| Q |
989 |
ttcatttggatatgtgtgggaccaaggtaagactgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatcttt |
1088 |
Q |
| |
|
|| ||||||| ||| | |||||| ||||| | |||| ||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||| | |
|
|
| T |
46359121 |
ctcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccat |
46359220 |
T |
|
| Q |
1089 |
acactggaagctctttttaagacaacaagttgcagtgctgatatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctcc |
1188 |
Q |
| |
|
|| ||| ||||| |||| ||| |||| || | |||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||| ||| |
|
|
| T |
46359221 |
acgctgcaagctttttt---gaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatcc |
46359317 |
T |
|
| Q |
1189 |
ttcctgatga |
1198 |
Q |
| |
|
|||||||||| |
|
|
| T |
46359318 |
ttcctgatga |
46359327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 21 - 484
Target Start/End: Original strand, 46358833 - 46359300
Alignment:
| Q |
21 |
tttgcactcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttatcttgttcataaggtgggtttgga |
120 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| ||||| ||| || |||||||||| |||||| || |||||| || |||| || |||||||| |
|
|
| T |
46358833 |
tttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataaagttggtttgga |
46358932 |
T |
|
| Q |
121 |
aaaattataagtgcctaatcactacccctgttctcgaatcccttgtctcatcaatgt---gctcttctgaatcat-ctcatcttaaactaaggaaaaatg |
216 |
Q |
| |
|
| ||| | ||| ||| ||||||||||||||||| ||||||||||| ||| ||| | ||| | | | || | || || | |||||||| || | |
|
|
| T |
46358933 |
agaataacaaggacctcatcactacccctgttctggaatcccttgtttcagaaatatgccgctggttccactgatgataatattcatctaaggaagaacg |
46359032 |
T |
|
| Q |
217 |
acatactttttctgtgggatttgcttaagaatattggccattatcaaacaggccttcttaacccacccattctcaatcacctcatacaattcttctcaat |
316 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |||||||||| ||||| || | |||||||| | | ||||||||||| ||| |||| | ||| | | |
|
|
| T |
46359033 |
acatattttttctgtgggaattgcttaagcatattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggatt |
46359132 |
T |
|
| Q |
317 |
tatagggcgagaaggcaagtctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagct |
416 |
Q |
| |
|
|| | | |||| ||| | | ||| ||||||||||||| ||||||| |||||||| ||||| |||||||| |||||| | ||| || |||||| |
|
|
| T |
46359133 |
gatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagct |
46359232 |
T |
|
| Q |
417 |
cttttgaccacaacgtgtagtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct |
484 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||||||| ||||||| |||||||| ||||||| |
|
|
| T |
46359233 |
tttttgaccacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct |
46359300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 5e-50; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 5e-50
Query Start/End: Original strand, 1030 - 1198
Target Start/End: Original strand, 410926 - 411095
Alignment:
| Q |
1030 |
aagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgc-tg |
1128 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||| || ||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||||| | | |
|
|
| T |
410926 |
aagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgcagtacttt |
411025 |
T |
|
| Q |
1129 |
atatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctgatga |
1198 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
411026 |
atatgctccagcaagcggcttctatctgtcaaaagatgctgcttcatccagaaaccctccttcccgatga |
411095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 9161362 - 9161429
Alignment:
| Q |
337 |
ctgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattacttt |
404 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
9161362 |
ctgcacttgaagtttttcattaatttgaggtctttcaatgtgttccgaatcaagagacatattacttt |
9161429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 410918 - 410977
Alignment:
| Q |
338 |
tgcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacata |
397 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
410918 |
tgcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacata |
410977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 884 - 940
Target Start/End: Original strand, 410771 - 410827
Alignment:
| Q |
884 |
tgaactaaggcagaatgacatactttttctgtgggacttgcttaaacatattggcca |
940 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
410771 |
tgaactaaggaagaatgacataatttttatgtgagacttgcttaagcatattggcca |
410827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1020 - 1075
Target Start/End: Original strand, 9161361 - 9161416
Alignment:
| Q |
1020 |
actgcactccaagtttttcataaatttgaggtctttcagtgtgtgcctaatcaaga |
1075 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||||| || |||||||| |
|
|
| T |
9161361 |
actgcacttgaagtttttcattaatttgaggtctttcaatgtgttccgaatcaaga |
9161416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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