View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_10 (Length: 591)
Name: NF16543_low_10
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 45 - 581
Target Start/End: Complemental strand, 41352293 - 41351757
Alignment:
| Q |
45 |
tttgagtatactacaagcagtaaccacactagccacagtgcatcattctttatcaatccattcagcagcaactcttcctgaacttcggccgcccaacttt |
144 |
Q |
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| T |
41352293 |
tttgagtatactacaagcagtaaccacactagccacagtgcatcattctttatcaatccattcagcagcaactcttcctgaacttcggccgcccaacttt |
41352194 |
T |
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| Q |
145 |
ccgaacgacacactagataatcctttgaagctgctactaccgctgtcgttcaaatttcggagttttctcgatttgtttatctttgaacaattgatatcaa |
244 |
Q |
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| T |
41352193 |
ccgaacgacacactagataatcctttgaagctgctactaccgctgtcgttcaaatttcggagttttctcgatttgtttatctttgaacaattgatatcaa |
41352094 |
T |
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| Q |
245 |
cattgtcttgatcagtttcgtcgtgattttcaattttcatgacaaccataagtctaactatgttgcttcgacaaaatggacaaactggtggagttataga |
344 |
Q |
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| T |
41352093 |
cattgtcttgatcagtttcgtcgtgattttcaattttcatgacaaccataagtctaactatgttgcttcgacaaaatggacaaactggtggagttataga |
41351994 |
T |
|
| Q |
345 |
agtagttgtcgggttcggtttgttgtagcaacaaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgc |
444 |
Q |
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| T |
41351993 |
agtagttgtcgggttcggtttgttgtagcaacaaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgc |
41351894 |
T |
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| Q |
445 |
tcaaagcagatgcaacataattctgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaa |
544 |
Q |
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| T |
41351893 |
tcaaagcagatgcaacataattctgactcactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaa |
41351794 |
T |
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| Q |
545 |
ttttaaacttggccaaataatcatctttcagcctttg |
581 |
Q |
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| T |
41351793 |
ttttaaacttggccaaataatcatctttcagcctttg |
41351757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 482
Target Start/End: Complemental strand, 23714941 - 23714846
Alignment:
| Q |
387 |
tgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgactcactaacctg |
482 |
Q |
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|||||||||||||||||| ||||| ||||| | || || |||||||| || |||||||||||||||||||| |||||||| | ||| |||||||| |
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| T |
23714941 |
tgtgcattgtgcacacatctggtggccacagtcttggacctcaattgtacacacctgctcaaagcagatgcagcataattccgtctcgctaacctg |
23714846 |
T |
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