View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_12 (Length: 537)
Name: NF16543_low_12
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 2 - 518
Target Start/End: Complemental strand, 19755479 - 19754963
Alignment:
| Q |
2 |
agggtgctaaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattgaccccatctttgaggacaatatgatagt |
101 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
19755479 |
agggtgctgaagttagcaatgccgaaacgggcaagcaacaaacacctccttccacttttaaccagtcaattaaccccatctttgaggacaatatgataat |
19755380 |
T |
|
| Q |
102 |
tgactctagtcctcccaaagatgatgaagaccgagagaaaatgctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacac |
201 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
19755379 |
tgactctagtcctcccaaagatgatgaagacccagagaaaatgctttctgaacctcctcaagatttgaatgataaaagtgttgaagatgatcaacaacac |
19755280 |
T |
|
| Q |
202 |
atttatgaagaaaatgaagggggtccatctccggtcgaaggtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgaca |
301 |
Q |
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||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755279 |
attgatgaagaaaatgaagggggtccatctctggtcgaaagtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgaca |
19755180 |
T |
|
| Q |
302 |
ctgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactccagtgacaaattctac |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19755179 |
ctgatggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactcgagtgacaaattctac |
19755080 |
T |
|
| Q |
402 |
cactgtgactataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctcccttcaaat |
501 |
Q |
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|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19755079 |
cagtgtgacaataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctcccttcaaat |
19754980 |
T |
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| Q |
502 |
actgacacagagtcttc |
518 |
Q |
| |
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||||||||||||||||| |
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| T |
19754979 |
actgacacagagtcttc |
19754963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 8135128 - 8135228
Alignment:
| Q |
145 |
ctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtg |
244 |
Q |
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|||||||| | | ||||||||| ||||| | |||| ||||||||||||| || |||| | |||| ||| | |||||||||||||||| |||||| ||| |
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| T |
8135128 |
ctttctgatcattctcaagattcaaatgccagaagtattgaagatgatcagcatcacactgatgaggaagacgaagggggtccatctctagtcgaaagtg |
8135227 |
T |
|
| Q |
245 |
g |
245 |
Q |
| |
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| |
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|
| T |
8135228 |
g |
8135228 |
T |
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