View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_15 (Length: 419)
Name: NF16543_low_15
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 27976949 - 27977354
Alignment:
| Q |
13 |
aaggacaataaaggaaaacaacaaatccgaaggacattcgcattctaaacatcaacaacctatgcaatctcaacttaggccgatttttcgacatttaaga |
112 |
Q |
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| T |
27976949 |
aaggacaataaaggaaaacaacaaatccgaaggacattcacattctaaacatcaacaacctatgcaatctcaacttaggccgatttttcgacatttaaga |
27977048 |
T |
|
| Q |
113 |
gagattagaactgaattatcactttggcttgaacataatgcagtgttgcaggatgaactacaaggtagatattcatcattatgcaacattcaagatgaaa |
212 |
Q |
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| T |
27977049 |
gagattagaactgaattatcgctttggcttgaacataatgcagtgttgcaggatgaactacaaggtagatattcatcattatgcaacattcaagatgaaa |
27977148 |
T |
|
| Q |
213 |
ttgcaagagcaggtaataataataatgcagaatctggtggtgctgatgaaaataataaagataaagatgctgagataataagtggttatcaagttgcaaa |
312 |
Q |
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| T |
27977149 |
ttgcaagagcaggtaataataataatgaagaatctggtggtgctgatgaaaataataaagataaagatgctgagataataagtggttatcaagttgcaaa |
27977248 |
T |
|
| Q |
313 |
atttcaacgtgagattcttaacatgaaacaagagaatagtaaagttgcaagtgagttacaagctggtcttagtcttgtgaaaggaatgaaaaatgaggtt |
412 |
Q |
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| T |
27977249 |
atttcaaggtgagattcttaacatgaaacaagagaatagtaaagttgcaagtgagttacaagctggtcttagtcttgtgaaaggaatgaaaaatgatgtt |
27977348 |
T |
|
| Q |
413 |
gagaag |
418 |
Q |
| |
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| T |
27977349 |
gagaag |
27977354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 70 - 272
Target Start/End: Original strand, 28306740 - 28306944
Alignment:
| Q |
70 |
acctatgcaatctcaacttaggccgatttttcgacatttaagagagattagaactgaattatcactttggcttgaacataatgcagtgttgcaggatgaa |
169 |
Q |
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| T |
28306740 |
acctatgcaatcataacttag-ccgattttttgacatttaagagagaatagaattgaattatcactttggttggaacacaatgctttgttgcaagatgaa |
28306838 |
T |
|
| Q |
170 |
ctacaaggtagatattcatcattatgcaacattcaagatgaaattgcaagagcaggtaataataataat---gcagaatctggtggtgctgatgaaaata |
266 |
Q |
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| T |
28306839 |
ctacaagggagatattcatcattatgcaacattcaagaagaaattgcaagagtaggtaatcataataattaagtggaatctggtaatgttgatgaaaata |
28306938 |
T |
|
| Q |
267 |
ataaag |
272 |
Q |
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|||||| |
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| T |
28306939 |
ataaag |
28306944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 406
Target Start/End: Original strand, 28306967 - 28307038
Alignment:
| Q |
332 |
aacatgaaacaagagaatagtaaagttgcaagtgagttacaagctggtcttagtcttgtgaaaggaatgaaaaat |
406 |
Q |
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|||||||||| ||||||||||| ||||||||||| |||||| | |||||| |||||||||||||||||||||| |
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| T |
28306967 |
aacatgaaac--gagaatagtaa-gttgcaagtgaattacaaattagtcttattcttgtgaaaggaatgaaaaat |
28307038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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