View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_16 (Length: 407)
Name: NF16543_low_16
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 23 - 391
Target Start/End: Original strand, 10727840 - 10728208
Alignment:
| Q |
23 |
tgcacaaacagtagccgaaccctcacaccagaagacagaaaacaccagtaagcacctgtgcacattataccagccccactcaagaactacaaaggcaatc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10727840 |
tgcacaaacagtagccgaaccctcacaccagaagacagaaaacaccagtaagcacctgtgcacattataccagccccactcaagaactacaaaggcaatc |
10727939 |
T |
|
| Q |
123 |
tcttgggttccaacatcattcataaaacaaacatgtcggaattgttagccgagttaacccccacctccacgacaacacttttacttcatccactagctcc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10727940 |
tcttgggttccaacatcattcataaaacaaacatgtcggaattgttagccgagttaacccccacctccacgacaacacttttacttcatccactagctcc |
10728039 |
T |
|
| Q |
223 |
ggcatcgaaatcactccattgttgaaaatgaaattgtttctagctttccataaaacccaaatcgttgaatgccaaatgagactcatcccctttgtttcct |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10728040 |
ggcatcgaaatcactccattgttgaaaatgaaattgtttctagctttccataagacccaaatcgttgaatgctaaatgagactcatcccctttgtttcct |
10728139 |
T |
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| Q |
323 |
ttttgttcttcgacatactattccaagtttccaacattcccaatggttaaacaaatttggcagcattat |
391 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10728140 |
ttttgttcctcgacatactattccatgtttccaacattcccaatggttaaacaaatttggcagcattat |
10728208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 242 - 348
Target Start/End: Original strand, 8324402 - 8324508
Alignment:
| Q |
242 |
tgttgaaaatgaaattgtttctagctttccataaaacccaaatcgttgaatgccaaatgagactcatcccctttgtttcctttttgttcttcgacatact |
341 |
Q |
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||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
8324402 |
tgttgaaaatgcaattgtttctaactttccatatgacccaaatcgttgaatgtcaaatgagtctcatcccctttgtttcctttttactcctcgacatact |
8324501 |
T |
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| Q |
342 |
attccaa |
348 |
Q |
| |
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||||||| |
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| T |
8324502 |
attccaa |
8324508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 41029725 - 41029688
Alignment:
| Q |
118 |
caatctcttgggttccaacatcattcataaaacaaaca |
155 |
Q |
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|||||| ||||||||||||| ||||||||||||||||| |
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| T |
41029725 |
caatcttttgggttccaacaccattcataaaacaaaca |
41029688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 29083230 - 29083182
Alignment:
| Q |
113 |
aaaggcaatctcttgggttccaacatcattcataaaacaaacatgtcgg |
161 |
Q |
| |
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||||||| ||| ||||||||||||| |||||||||||||| || ||||| |
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| T |
29083230 |
aaaggcattcttttgggttccaacaccattcataaaacaagcaagtcgg |
29083182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 287
Target Start/End: Complemental strand, 37035565 - 37035537
Alignment:
| Q |
259 |
tttctagctttccataaaacccaaatcgt |
287 |
Q |
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||||||||||||||||||||||||||||| |
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|
| T |
37035565 |
tttctagctttccataaaacccaaatcgt |
37035537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 36518311 - 36518260
Alignment:
| Q |
23 |
tgcacaaacagtagccgaaccctcacaccagaagacagaaaacaccagtaag |
74 |
Q |
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||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
36518311 |
tgcacaaacagcagccgaaccctcacaccagaaaacatgaaacaccagtaag |
36518260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 29287141 - 29287095
Alignment:
| Q |
115 |
aggcaatctcttgggttccaacatcattcataaaacaaacatgtcgg |
161 |
Q |
| |
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||||| || ||||| ||||||| |||||||||||||||||||||||| |
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| T |
29287141 |
aggcagtcccttggattccaacttcattcataaaacaaacatgtcgg |
29287095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 47820216 - 47820179
Alignment:
| Q |
262 |
ctagctttccataaaacccaaatcgttgaatgccaaat |
299 |
Q |
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|||||||||||||||||||||||||| | ||||||||| |
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| T |
47820216 |
ctagctttccataaaacccaaatcgtcgcatgccaaat |
47820179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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