View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_18 (Length: 386)
Name: NF16543_low_18
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 381
Target Start/End: Complemental strand, 50264599 - 50264232
Alignment:
| Q |
17 |
acaaacccaatcacccccaaataaatttcattcattcctttgtttcttgcttcaatcaccaaaacctatgactgctcttacctcaaacctaaaccttatc |
116 |
Q |
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| T |
50264599 |
acaaacccaatcacccccaaataaatttcattcattcctttgtttcttgcttcaatcaccaaaacctatgactgctcttacctcaaacctaaaccttatc |
50264500 |
T |
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| Q |
117 |
ccacaacatggtaaaaaccatcaaca---ccaaggttcttgtgttgttgaggaaattaaagggctaattaacgtacacaaagatggatatatagaacgac |
213 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
50264499 |
ccacaacatggtaaaaaccatcaacaacaccaaggttcttgtgttgttgaggaaattaaagggctaattaaagtacataaagatggatatatagaacgac |
50264400 |
T |
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| Q |
214 |
ccaacattgttccatgtgtcacttctgatctatgtccaaaaataaatgtgacttcaagggacattatcattgacagtgttacaaacatttgggcacgttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50264399 |
ccaacattgttccatgtgtcacttctgatctatgtccaaaaataaatgtgacttcaagggacattatcattgacagtgttacaaacatttgggcacgttt |
50264300 |
T |
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| Q |
314 |
ctatgttccaaattcttcacnnnnnnnnctacctttgttagtgtattttcatggtggtggtttctgtg |
381 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50264299 |
ctatgttccaaattctccacaaaaaaaactacctttgttagtgtattttcatggtggtggtttctgtg |
50264232 |
T |
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