View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_19 (Length: 379)
Name: NF16543_low_19
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 363
Target Start/End: Complemental strand, 45795653 - 45795304
Alignment:
| Q |
14 |
gaagaaaaataggacnnnnnnncaaatagttgtcccataaattatcatgcaaatggtggttcaaataacatacctcatattttatatacaaagaaaagaa |
113 |
Q |
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| T |
45795653 |
gaagaaaaataggacaaaaaaacaaacagttgtcccataaattgttgtgcaaatggttgttcaaataacatacctcatattttatatacaaagaaaagaa |
45795554 |
T |
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| Q |
114 |
aaatgaannnnnnnacaattatacactaaataaatgaagatttatctatctatctcaaacttaatcttcatctctcagcatggagaaactactaacacgt |
213 |
Q |
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| T |
45795553 |
aaatgattttttttacaattatacactaaataaatgaagatttatctatctatctcaaacttaatcttcatctctcagcatggagaaactactaacacgt |
45795454 |
T |
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| Q |
214 |
gaaataaagggcaagtaagggctaaaacaataaatttacccatcatggatcagctcagccaccgtttgtgtcacacaatattaaattaagcctcatttca |
313 |
Q |
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| T |
45795453 |
gaaataaagggcaagtaagggctaaaacaataaatttagccatcatggatcagctcagccaccgtttgtgtcacacaatattaaattaagcctcatttca |
45795354 |
T |
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| Q |
314 |
tcatcatgaatattctccgctcaggcatgttgcaaccacttcaatgatat |
363 |
Q |
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| T |
45795353 |
tcatcatgaatattctccgctcaggcatgttgcaaccacttcaatgatat |
45795304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 32752541 - 32752581
Alignment:
| Q |
43 |
ttgtcccataaattatcatgcaaatggtggttcaaataaca |
83 |
Q |
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| T |
32752541 |
ttgtcccataaattatcattgaaatggttgttcaaataaca |
32752581 |
T |
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