View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_2 (Length: 847)
Name: NF16543_low_2
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 721; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 721; E-Value: 0
Query Start/End: Original strand, 11 - 831
Target Start/End: Complemental strand, 26816462 - 26815645
Alignment:
| Q |
11 |
tgagatgaagtgaacggctccattgtgaaacactagcatgtcaaatttcaagcttttgttactgttatacaaacttccctcgttttttcttccaaacacc |
110 |
Q |
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| T |
26816462 |
tgagatgaagtgaacggctccattgtgaaacactggcatgtcaaatttcaagcttttgttactgttatacaaacttccctcgttttttcttccaaacacc |
26816363 |
T |
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| Q |
111 |
ttcctttggtacatacactttgcaatctaaatatgttgaccaaatcttatcagagttatcatnnnnnnnntaaacaccatcaatcatgtttgtcatcaca |
210 |
Q |
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| T |
26816362 |
ttcctttggtacatacactttgcaatctaaatatgttgaccaaatcttatcagagttatcataaaaaaa-taaacaccatcaatcatgtttgtcatcaca |
26816264 |
T |
|
| Q |
211 |
ttcaagaacaactttgagatctaaatcaacatttataggttgcagttgctctggcaattgaattggtaaccaagttcgcgttgctgggttgctaataaac |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26816263 |
ttcaagaacaactttgagatctaaatcaacatttataggttgcagttgctctggcaattgaattggtaaccaagttcgtgttgctgggttgctaataaac |
26816164 |
T |
|
| Q |
311 |
aactggaaatcattgagctggattgtagaacgacaaagaatcaagcaattggttgatgacaaaatcttagctgatttagctaagaagtcgagaacatctt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26816163 |
aactggaaatcattgagctggattgtagaacgacaaagaatcaagcaattggttgatgacaaaatcttagctgatttagctaagaagtcgagaacatctt |
26816064 |
T |
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| Q |
411 |
cggaaacacctgatgatgaatgttcctctctagatatagagcataattgagcaatgtttccattgtatctttgagagaaatttgattgaatgaaaaaaga |
510 |
Q |
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| T |
26816063 |
cggaaacacctgatgatgaatgttcctct-tagatatagagcataattgagcaatgtttccattgtatctttgagagaaatttgattgaatgaaaaaaga |
26815965 |
T |
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| Q |
511 |
ggaatcatcctttagaaagaatattcgcagatacaaannnnnnnnngcaagattaaatgcaatttttcttgacttgatgtggatttttcttcttacagaa |
610 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
26815964 |
ggaatcatcctttagaaagaatattcgcagatataaatatttttttacaagattaaatgcaa-tattcttgacttgatgtggatttttcttcttacagaa |
26815866 |
T |
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| Q |
611 |
attggttacttctgttctattgctcaatgacatctaagtgcattctgtaatacctaatcactgtaaatattcaactcttcactatgtgcaggtttctaaa |
710 |
Q |
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| T |
26815865 |
attggttacttctgttctattgctcaatgacatctaagtgcattctgtagtacctaatcactgtaaatattcaactcttcactatgtgcaggttcctaaa |
26815766 |
T |
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| Q |
711 |
cagttttgcccggaagttgctgtagggtttaacgatccacagtgtgacgcttcacattggtgatggtaacctactctaatatttttccttaaatatttga |
810 |
Q |
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| T |
26815765 |
cagttttgcccggaagttgctgtagggtttaacgatccacagtgtgacgcttcacattggtgatggtaacctactctaatatttttccttaaatatttga |
26815666 |
T |
|
| Q |
811 |
gtttaattttgatacactaag |
831 |
Q |
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| T |
26815665 |
gtttaattttgatacactaag |
26815645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 675 - 817
Target Start/End: Complemental strand, 26819535 - 26819389
Alignment:
| Q |
675 |
aaatattcaactcttcactatgtgcaggtttctaaacagttttgcccggaagttgctgtagggtttaacgatccacagtgtgacgcttcacattggtgat |
774 |
Q |
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||||||| || |||| ||| |||||||||||| ||||| |||| ||| |||||||| ||||||||||| ||||||| ||||||| |||| |||||||||| |
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| T |
26819535 |
aaatattgaagtcttgactttgtgcaggtttccaaacaatttttccctgaagttgcagtagggtttaatgatccac-gtgtgactcttcgcattggtgat |
26819437 |
T |
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| Q |
775 |
ggta-----acctactctaatatttttccttaaatatttgagtttaat |
817 |
Q |
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|||| |||||| ||||||| |||||||||||||||| ||||||| |
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| T |
26819436 |
ggtacgatcacctacactaatatgtttccttaaatatttgtgtttaat |
26819389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 48132899 - 48132858
Alignment:
| Q |
200 |
ttgtcatcacattcaagaacaactttgagatctaaatcaaca |
241 |
Q |
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| T |
48132899 |
ttgtcatcacattcaagaacacctttaagatctacatcaaca |
48132858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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