View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16543_low_20 (Length: 361)
Name: NF16543_low_20
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 36339078 - 36339418
Alignment:
| Q |
15 |
taaacaagaacaagtttcttgcagtcaactttcattctttgaattcaattcagttaccatttgagctaactggtgagaaagaccactata----cttgaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
36339078 |
taaacaagaacaagtttcttgcagtctactttcactctttgaattcaattcagttaccgtttgagctaactggtgagaaaggccactatatatacttgaa |
36339177 |
T |
|
| Q |
111 |
tctgttaaaaatttgaaatcatacaatagctttatgacaaaggtggtgatgagattatgacaacctttaggtttgatgcatttatgagattaggtcttgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36339178 |
tctgttaaaaatttgaaatcatacaatagctttatgacaaagatggtggtgagattatgacaacctttaggtttgatgcatttatgagattaggttttgc |
36339277 |
T |
|
| Q |
211 |
attgaagaactgcaacatgtagcatcagtggaaatcgtgatatagaatcatgttgtaattgtttagtggtccccttctgtaggaggtgtatagttttcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36339278 |
attgaagaactgcaacatgtagcatcagtggaaatcgtgatatagaatcatgttgtaattgtttagtggtccccttctgtaggaggggtatagttttcaa |
36339377 |
T |
|
| Q |
311 |
aggaactgtagtttgtatttgtacatttaatttgcttcttc |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36339378 |
aggaactgtagtttgtatttgtacatttaatttgcttcttc |
36339418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University