View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16543_low_21 (Length: 351)
Name: NF16543_low_21
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 48461222 - 48461547
Alignment:
| Q |
18 |
acgagcaacgttgattgtagagttaatgaaggcggcacgtgcgggtggatcggaggcgatgaaggcgaacaaggatgaattgctacctgcacctccaatg |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48461222 |
acgagcaacgtcgattgtagagttaatgaaggcggcacatgcgggtggatcggaggcgatgaaggccaacaaggatgaattgctacctgcacctccaatg |
48461321 |
T |
|
| Q |
118 |
gaaaagagagtagctgcaggaggggatttggttttgaaggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagtttgtaggtga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48461322 |
gaaaagagagtagctgcaggaggggattttgttttgaaggttttggtgaaagtgttgagggataagatttgagaagatgaaatttcaagtttgtaggtga |
48461421 |
T |
|
| Q |
218 |
tgttgttgggtgtgaggaatgagtagaagatgtgagtaaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagtaaataccttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48461422 |
tgttgttgggtgtgaggaatgagtagaagatgtgagtaaagagtgatgtgtctactgtagttggagggaaaaatggattttctaaccagtaaataccttt |
48461521 |
T |
|
| Q |
318 |
cacacgtgtgattgatgatgatgatg |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48461522 |
cacacgtgtgattgatgatgatgatg |
48461547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 343
Target Start/End: Original strand, 48456000 - 48456103
Alignment:
| Q |
240 |
gtagaagatgtgagtaaagagtgatgtgtctactatagttggagggaaaaatggattttctaaccagtaaatacctttcacacgtgtgattgatgatgat |
339 |
Q |
| |
|
|||||| |||||||| || |||||||| |||| || ||||||||||| ||| ||||||| |||||| || ||||||||||||||| ||||||||| | |
|
|
| T |
48456000 |
gtagaaaatgtgagtgaaaagtgatgtatctatggaagatggagggaaaagtgggttttctatccagtatatgcctttcacacgtgtggttgatgatggt |
48456099 |
T |
|
| Q |
340 |
gatg |
343 |
Q |
| |
|
|||| |
|
|
| T |
48456100 |
gatg |
48456103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University