View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_24 (Length: 344)
Name: NF16543_low_24
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 33479024 - 33479367
Alignment:
| Q |
1 |
aatacagaagataacagaacaaaaacacacagaaaaatgattcttttctgaaactagctactataacacaaaaagattaaaactttacctaaaaatggtg |
100 |
Q |
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| T |
33479024 |
aatacagaagataacagaacaaaaacacacagaaaaatgattcttttctgaaactagctactataacacaaaaagattaaaactttacctaaaaatggtg |
33479123 |
T |
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| Q |
101 |
tgtactgaaaccctttcagtgttgaaaacaatgagtgaattgttttgttaaatttgtaaagtagaaaaaagaaacagcacaggaaccgaaaaagtaaaag |
200 |
Q |
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| T |
33479124 |
tgttctgaaaccctttcagtgttgaaaacaatgagtggattgttttgttaaatttgtaaagtagagaaaagaaacagcacaggaaccgaaaaagcaaaag |
33479223 |
T |
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| Q |
201 |
gagaatggatgatgatagctcatgaactgtgttttctactttaacagttccattccatgcttttgatgattatttcactttgtgggtctctcagaaaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33479224 |
gagaatggatgatgatagctcatgaactgtgttttctactttaacagttccattccatgcttttgatgattatttcactttgtgggtctctcagaaattt |
33479323 |
T |
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| Q |
301 |
tttgttgtaatgaattggaccacagaattatataacactagtac |
344 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33479324 |
tttgttgtattgaattggaccacagaattatataacactagtac |
33479367 |
T |
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