View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_25 (Length: 339)
Name: NF16543_low_25
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 40063443 - 40063121
Alignment:
| Q |
1 |
tccattgattcattgctttcgtcagtgtatatatatgtaagtaaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagt |
100 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063443 |
tccattgattcattgcgtgcgtcagtgtatatatatgtaagtaaaacctagctaccgtcacgtcatgttcatttatttttaatccataaataaacagagt |
40063344 |
T |
|
| Q |
101 |
actctgttttcttttcttttctccatcatcatcatcaannnnnnn-cccttatacacgtttttatcacatctattttttccttgtcagagaaaaaacagt |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063343 |
actctgttttcttttctattctccatcatcatcatcaattttttttcccttatacacgtttttatcacatctattttttccttgtcagagaaaaaacagt |
40063244 |
T |
|
| Q |
200 |
ttccttaatcttcataataactctatactacgtatctttcaaacttcaaacgtcacaacccatttcataactcaacacaacaatttattatttattatta |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063243 |
ttccttaatcttcataataactctatactacgtatctttcaaacttcaaacgtcacaacccatttcataactcaacacaacaatttattatttattatta |
40063144 |
T |
|
| Q |
300 |
caacacagcacaaacccgcttca |
322 |
Q |
| |
|
||||||||||||||||| ||||| |
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|
| T |
40063143 |
caacacagcacaaacccacttca |
40063121 |
T |
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