View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_27 (Length: 325)
Name: NF16543_low_27
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 52874820 - 52875125
Alignment:
| Q |
1 |
ctagagttattattcaccaagcaagtcttattctcatcttgtgttcacctagtttaatgattgcaagtttatttagttattttactactgaatcttaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52874820 |
ctagagttattattcaccaagcaagtcttattctcatcttgtgttcacctagtttaatgattgcaagtttatttagttattttactactgaatcttaaag |
52874919 |
T |
|
| Q |
101 |
gatgttagtttatatatgtgtgtttcttttttattttagggatcttccccggctgaaagagtgacaaatgattctgaaaacgaaattgttaacatagata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52874920 |
gatgttagtttatatatgtgtgtttcttttttattttagggatcttccactgctgaaagagtgacaaatgattctgaaaacgaaattgttaacatagata |
52875019 |
T |
|
| Q |
201 |
caaagggggctatcatctttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcatcttggtttatctggatattgattgtactttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52875020 |
caaagggggctatcatctttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcatcttggtttatctggatattgattgtactttt |
52875119 |
T |
|
| Q |
301 |
ctgcat |
306 |
Q |
| |
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|||||| |
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| T |
52875120 |
ctgcat |
52875125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 257126 - 257038
Alignment:
| Q |
218 |
tttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcatcttggtttatctggatattgattgtacttttctgcat |
306 |
Q |
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|||||||| || || ||||| |||||||| || || || ||||||||||||||||||||||| ||| | | ||||||||||||||||| |
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| T |
257126 |
tttgtcataacagcatctacctttcttgttctgttgttcttcttcatgtcatcttggtttatgtggttgctcattgtacttttctgcat |
257038 |
T |
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