View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_28 (Length: 321)
Name: NF16543_low_28
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 34421097 - 34420795
Alignment:
| Q |
9 |
gaagaactaagtactgcttgggaaattgcttacgatgaattggcaatttctattaaaaaagcagttaaacttgggatgatctattgttagaaatataaat |
108 |
Q |
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| T |
34421097 |
gaagaactaaatactgcttgggaaattgcttacgatgaattggcaatttctattaaaaaagcagttaaacttgggatgatctattgttagaaatataaat |
34420998 |
T |
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| Q |
109 |
aaaatttgtattgctaaatttatttttgaaacaagtttctataataaatattgttcaaaataattatgcaatattgcagtgtttatgccagtaaatctct |
208 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34420997 |
aaaattcgtattgctaaatttattttttaaacaagtttctataataaatattgttcaaaataattatgcaatattgcagtgtttatgccagtaaatctct |
34420898 |
T |
|
| Q |
209 |
tgatcaaattccaaacaaaatcaagtttaaaagtggctcaacattttgtttacgagtaaaaagactatgtatgtgtcg-----tgtctgtctaatgtttt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
34420897 |
tgatcaaattccaaacaaaatcaagtttaaaagtggctcaacattttgtttacgagtaaaaagagtatgtatgtgtcgtgtcgtgtctgtctaatgtttt |
34420798 |
T |
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| Q |
304 |
ggt |
306 |
Q |
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||| |
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| T |
34420797 |
ggt |
34420795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 34429316 - 34429218
Alignment:
| Q |
9 |
gaagaactaagtactgcttgggaaattgcttacgatgaattggcaatttctattaaaaaagc----agttaaacttgggatgatctattgttagaaata |
103 |
Q |
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|||||||||||||||||||||||| ||||||| |||| ||||||| ||| ||||| ||| | ||||||| ||| ||||||||||||||| ||||| |
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| T |
34429316 |
gaagaactaagtactgcttgggaagttgcttatgatggattggcagcttcaattaagaaatcaatgagttaaatttgagatgatctattgttataaata |
34429218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 93
Target Start/End: Complemental strand, 34426917 - 34426835
Alignment:
| Q |
15 |
ctaagtactgcttgggaaattgcttacgatgaattggcaatttctattaaaaaagc----agttaaacttgggatgatctatt |
93 |
Q |
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||||||||||||||| || ||||||| |||| ||||||| ||| ||||| ||| | ||||||||||||||||||||||| |
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| T |
34426917 |
ctaagtactgcttggaaagttgcttatgatggattggcagcttcaattaagaaaacaatgagttaaacttgggatgatctatt |
34426835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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