View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_35 (Length: 302)
Name: NF16543_low_35
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 4555538 - 4555820
Alignment:
| Q |
1 |
ttgacaaaatgatcctgtgacatcacctctacagtcatagaatccatagacagcatcaactgtgttgtctcctatgcttgtgtgattatatcctttactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4555538 |
ttgacaaaatgatcctgtgacatcacctctacagtcatagagtccatagacagcatcaactgtgttgtctcctatgcttgtgtgattatatcctttactt |
4555637 |
T |
|
| Q |
101 |
acaatagcatcagaggtgagcgatgaaaggactatattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgacaatcatcaccta |
200 |
Q |
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|||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4555638 |
acaataccatcaaaggtgagcgatgaaaggaatttattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgacaatcatcaccta |
4555737 |
T |
|
| Q |
201 |
cataatttgttgtttatcattatatgtttcatgattggtgccataaccctttcttatgttggggtcggttaactgttgttatt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
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| T |
4555738 |
cataatttgttgtttatcattatatgtttcatgattggtgccataaccctttcttatgctggggtcggctatctgttgttatt |
4555820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3075633 - 3075425
Alignment:
| Q |
1 |
ttgacaaaatgatcctgtgacatcacctctacagtcatagaatccatagacagcatcaactgtgttgtctcctatgcttgtgtgattatatcctttactt |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |
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| T |
3075633 |
ttgacaaaatgatcctgttacatcacctctacaatcatacagaccatagacagcatcaactgtattgtcacctatacttgtatgattatatcctttactt |
3075534 |
T |
|
| Q |
101 |
acaatagcatcagaggtgagcgatgaaaggactatattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgacaatcatcaccta |
200 |
Q |
| |
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|||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| |
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| T |
3075533 |
acaatagcatcagatgagagcaatgaaaggactttattaaggttggatttgtatgtagttgtaagtgatttttcagttgaattgtgacaatcatcaccta |
3075434 |
T |
|
| Q |
201 |
cataatttg |
209 |
Q |
| |
|
||||||||| |
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|
| T |
3075433 |
cataatttg |
3075425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3086174 - 3085966
Alignment:
| Q |
1 |
ttgacaaaatgatcctgtgacatcacctctacagtcatagaatccatagacagcatcaactgtgttgtctcctatgcttgtgtgattatatcctttactt |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| |||||| |||||||||||||| |||||||||||||||||| |
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| T |
3086174 |
ttgacaaaatgatccagtgacatcacctctacaatcatagagaccatagacagcatcaattgtgttctctcctatgcttgtatgattatatcctttactt |
3086075 |
T |
|
| Q |
101 |
acaatagcatcagaggtgagcgatgaaaggactatattaaggttggatttgtatgtagttgtaagtgattgttctcttgaatcgtgacaatcatcaccta |
200 |
Q |
| |
|
|||||||||||||||| || ||| |||||| |||||||||| ||||||||||||| |||||| |||||||| |||| | ||||||||||||||||| |
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| T |
3086074 |
acaatagcatcagaggaaagaagtgagaggactttattaaggttagatttgtatgtagctgtaagagattgttcggttgagttgtgacaatcatcaccta |
3085975 |
T |
|
| Q |
201 |
cataatttg |
209 |
Q |
| |
|
||||||||| |
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|
| T |
3085974 |
cataatttg |
3085966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 30406195 - 30406147
Alignment:
| Q |
204 |
aatttgttgtttatcattatatgtttcatgattggtgccataacccttt |
252 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
30406195 |
aatttgttgtttttcattataagtttcatgattggtgccagaacccttt |
30406147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 25096060 - 25096012
Alignment:
| Q |
217 |
tcattatatgtttcatgattggtgccataaccctttcttatgttggggt |
265 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||| |||| |
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| T |
25096060 |
tcattataagtttcatgattggtgccagaaccccttcttatgtttgggt |
25096012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 25154030 - 25153982
Alignment:
| Q |
217 |
tcattatatgtttcatgattggtgccataaccctttcttatgttggggt |
265 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| |||||||||| |||| |
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| T |
25154030 |
tcattataagtttcatgattggtgccagaaccccttcttatgtttgggt |
25153982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 31250924 - 31250960
Alignment:
| Q |
229 |
tcatgattggtgccataaccctttcttatgttggggt |
265 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
31250924 |
tcatgattggtgccataaccctttcttatgtttgggt |
31250960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 10383341 - 10383385
Alignment:
| Q |
204 |
aatttgttgtttatcattatatgtttcatgattggtgccataacc |
248 |
Q |
| |
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||||||| |||||||||||| |||||||||||||||||| |||| |
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| T |
10383341 |
aatttgtaatttatcattataagtttcatgattggtgccaaaacc |
10383385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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