View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_37 (Length: 287)
Name: NF16543_low_37
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_37 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 15588815 - 15589074
Alignment:
| Q |
14 |
gaaaagtaaatataaaatccatttatttgataccaccacaataattaaatgataattgacactcatataatattctagcagatgggaaataacatagat- |
112 |
Q |
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| T |
15588815 |
gaaaagtaaatataaaatccatttatttgataccaccacaataattaaatgataattgacactcatataatattcttgcagatgggaaataacatagatc |
15588914 |
T |
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| Q |
113 |
tttttgctagtgcaaaaactcattcatccacataaagcttttgtgaactttgttgaagatggtactcttaaaaaccagttgggcatagacactgaaaatc |
212 |
Q |
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| T |
15588915 |
tttttgctagtgcaaaaactcattcatccacataaagcttttgtgtactttgttgaagctggtactcttaaaaaccagttgggcatagacaccgaaaatc |
15589014 |
T |
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| Q |
213 |
aatacactttatacgacaagaagaactacacttctttatcacacaatcagcatcagtaat |
272 |
Q |
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| T |
15589015 |
aatacactttatacgacaagaagaactacacttctttatcacacaatcagcatcagtaat |
15589074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 15600820 - 15600880
Alignment:
| Q |
14 |
gaaaagtaaatataaaatccatttatttgataccaccacaataattaaatgataattgaca |
74 |
Q |
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| T |
15600820 |
gaaaagtaaacataaaatccatttatttgatatcaccgcaataactaaatgacaatagaca |
15600880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 15610462 - 15610512
Alignment:
| Q |
14 |
gaaaagtaaatataaaatccatttatttgataccaccacaataattaaatga |
65 |
Q |
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| T |
15610462 |
gaaaagtaaatataaa-tccatttatttgatatcaccgcaataactaaatga |
15610512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 15610532 - 15610568
Alignment:
| Q |
113 |
tttttgctagtgcaaaaactcattcatccacataaag |
149 |
Q |
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| T |
15610532 |
tttttgctagtgcaaaaacttattcatccatataaag |
15610568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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