View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_38 (Length: 273)
Name: NF16543_low_38
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 117 - 257
Target Start/End: Complemental strand, 39370763 - 39370623
Alignment:
| Q |
117 |
tgatggatatggtttataatgcactagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaatatatgagtaa |
216 |
Q |
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| T |
39370763 |
tgatggatatggtttataatgcactagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaatatatgagtaa |
39370664 |
T |
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| Q |
217 |
tgtttagtgccattactgtggagagtttgcgaagtctatag |
257 |
Q |
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| T |
39370663 |
tgtttagtgccattactgtggagagtttgcgaagtctatag |
39370623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 34263699 - 34263626
Alignment:
| Q |
139 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaatatatga |
212 |
Q |
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| T |
34263699 |
actagtaactaaatgcggacaatgaaagaattatggtgatcaacatgatagaagatttcaaccaagagatatga |
34263626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 24528698 - 24528764
Alignment:
| Q |
139 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaaccaaaa |
205 |
Q |
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| T |
24528698 |
actagtaactaatggttggaaaggaaagaattgtggtgatcaatatggtaggagatttcaacaaaaa |
24528764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 2354024 - 2354087
Alignment:
| Q |
139 |
actagtaactaaaggtgggcaaggaaagaattatggtgatcaacatggtagaagatttcaacca |
202 |
Q |
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| T |
2354024 |
actagtaactaacggttggtaaggaaataaatatggtgatcaatatggcataagatttcaacca |
2354087 |
T |
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