View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_39 (Length: 267)
Name: NF16543_low_39
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 45916656 - 45916888
Alignment:
| Q |
20 |
catgaacggcaccgtcacgccaattatcggcacgttcctttcacgcaacaacatgaggctaaatcatcataacagaacaagagaagaagcatggagtatg |
119 |
Q |
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| T |
45916656 |
catgaacggcaccgtcacgccaattatcggcacgttcctttcacgcaacaacatgaagctaaatcatcataacagaacaagagaagaagcatggagtatg |
45916755 |
T |
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| Q |
120 |
tgcgaagtaaataaaaatacttacgggccaaccaatccaacactgtgagtgaggttcccattctgcaggcatgtgaaagccatgaaaagtaggtgtgttt |
219 |
Q |
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| T |
45916756 |
tgcgaagtaaataaaaatacttacgggccaaccaatccaacactgtgagtgaggttcccattctgcaggcatgtgaaagccatgaaaagtaggtgtgttt |
45916855 |
T |
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| Q |
220 |
tctagatgcatcatgcaatattctcactctctg |
252 |
Q |
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| T |
45916856 |
tctagatgcatcatgcaatattctcactctctg |
45916888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 45910042 - 45910110
Alignment:
| Q |
136 |
atacttacgggccaaccaatccaacactgtgagtgaggttcccattctgcaggcatgtgaaagccatga |
204 |
Q |
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| T |
45910042 |
atacttacgggacaacccatccaacactgagagtgaggttcccattctgaaggcatgtgaaagccatga |
45910110 |
T |
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