View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_4 (Length: 719)
Name: NF16543_low_4
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 14 - 703
Target Start/End: Complemental strand, 37294021 - 37293346
Alignment:
| Q |
14 |
aatatcgtaatcaatcgttaaattagttcagtgtcattgtagtgacctaacacaactgtatatgttttgtgacatacannnnnnnctaatgaaaatttct |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
37294021 |
aatatcgtaatcaatcgtcaaattagttcagtgtcattgtagtgacctaacacaactgtatatgttttgtgacatccatttttttctaatgaaaatttct |
37293922 |
T |
|
| Q |
114 |
tatataacatttcaacggatgaacttcgaatataaaagtcacaaccactgcaagtaaatggtctgccatctatgcaatatattaattgattgataaagaa |
213 |
Q |
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||| |||| ||||||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||| ||||| |||||||||||||||| |
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| T |
37293921 |
tatgtaacctttcaacggatgaactttgaatataaaactcacaactactgcaggtaaatggtctgcca----------atatttattgattgataaagaa |
37293832 |
T |
|
| Q |
214 |
atatcaatgcgacaaatatctattattatttttaaaaatcaatacaagatttggcatcnnnnnnngttgttgttgaggaaagacaagatttagcattttc |
313 |
Q |
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||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37293831 |
atatcaatgcgacaaatatctattattttttt---aaatcaagacaagatttggcatttttcttt-ttgttgttgaggaaagacaagatttagcattttc |
37293736 |
T |
|
| Q |
314 |
aacaacttatatatatctaccattacatttgtcagaattcagaaagtaataatttgaatatttatttactccttggtctattgatcattgacatgtgaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37293735 |
aacaacttatatatatctaccattacatttgtcagaattcagaaagtaataatttgaatatttatttactccttggtctattgatcattgacatgtgaaa |
37293636 |
T |
|
| Q |
414 |
atttattgcttaaggaccacttggcttcaacttctccttgctcttggtgatgaccaagaatagaactctatacaacacaatcatgccaaacatgatagca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37293635 |
atttattgcttaaggaccacttggcttcaacttctccttgctcttggtgatgaccaagaatagaactctatacaacacaatcatgccaaacatgatagca |
37293536 |
T |
|
| Q |
514 |
agatcaacccacttagagtgaccaatttcaacatgccatttatcattcaatatttctctaccactcacaatgttggtccccacagcaacttttaaccctt |
613 |
Q |
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| T |
37293535 |
agatcaacccacttagagtgaccaatttcaacatgccatttatcattcaatatttctctaccactcacaatgttggtccccacatcaacttttaaccctt |
37293436 |
T |
|
| Q |
614 |
caaattcattcttgaatgatccttgaaatgcatacttaaggaaagatatatggtataaagggtatttccatagtaatttaggaagttcat |
703 |
Q |
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| T |
37293435 |
caaattcattcttgaatgatccttgaaatgcatacttaaggaaagatatatggtataaagggtatttccatagtaatttaggaagttcat |
37293346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 443 - 557
Target Start/End: Complemental strand, 37301177 - 37301063
Alignment:
| Q |
443 |
acttctccttgctcttggtgatgaccaagaatagaactctatacaacacaatcatgccaaacatgatagcaagatcaacccacttagagtgaccaatttc |
542 |
Q |
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||||||||||| ||| ||||||||||||||||||||| ||| | |||||||| |||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
37301177 |
acttctccttgaccttattgatgaccaagaatagaactcgataaacaacaatcataccaaacatgataaaaagatcaacccacttcgagtgacctatttg |
37301078 |
T |
|
| Q |
543 |
aacatgccatttatc |
557 |
Q |
| |
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||||||||| |||| |
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| T |
37301077 |
cacatgccatatatc |
37301063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 605 - 647
Target Start/End: Complemental strand, 37301003 - 37300961
Alignment:
| Q |
605 |
ttaacccttcaaattcattcttgaatgatccttgaaatgcata |
647 |
Q |
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|||| |||||||||||||||||||| ||||||||||| ||||| |
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| T |
37301003 |
ttaagccttcaaattcattcttgaaggatccttgaaaagcata |
37300961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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