View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16543_low_43 (Length: 252)

Name: NF16543_low_43
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16543_low_43
NF16543_low_43
[»] scaffold0008 (2 HSPs)
scaffold0008 (95-230)||(55683-55832)
scaffold0008 (8-43)||(55596-55631)
[»] chr2 (10 HSPs)
chr2 (108-162)||(28766074-28766128)
chr2 (97-162)||(11465303-11465368)
chr2 (98-162)||(29850123-29850187)
chr2 (111-162)||(28605401-28605452)
chr2 (8-43)||(28765997-28766032)
chr2 (95-162)||(29031965-29032031)
chr2 (96-162)||(24380992-24381058)
chr2 (14-43)||(28605507-28605536)
chr2 (14-43)||(32086072-32086101)
chr2 (117-162)||(32086150-32086195)
[»] chr4 (12 HSPs)
chr4 (107-162)||(19927776-19927831)
chr4 (96-160)||(17276878-17276942)
chr4 (98-162)||(22351155-22351219)
chr4 (10-43)||(11781076-11781109)
chr4 (109-145)||(14649580-14649616)
chr4 (95-201)||(5680001-5680107)
chr4 (107-162)||(22172819-22172874)
chr4 (8-43)||(25024146-25024181)
chr4 (14-43)||(5679944-5679973)
chr4 (6-43)||(14649497-14649534)
chr4 (14-43)||(19635877-19635906)
chr4 (14-43)||(24638790-24638819)
[»] chr1 (4 HSPs)
chr1 (107-162)||(22665245-22665300)
chr1 (8-43)||(17120843-17120878)
chr1 (95-162)||(33191467-33191533)
chr1 (108-145)||(9787223-9787260)
[»] chr7 (15 HSPs)
chr7 (97-162)||(4987300-4987364)
chr7 (97-162)||(4991398-4991462)
chr7 (97-162)||(10586176-10586241)
chr7 (6-43)||(9131531-9131568)
chr7 (98-143)||(17152319-17152364)
chr7 (8-43)||(7397873-7397908)
chr7 (8-43)||(9730944-9730979)
chr7 (112-162)||(15870416-15870466)
chr7 (14-43)||(3190396-3190425)
chr7 (14-43)||(4987241-4987270)
chr7 (14-43)||(4991339-4991368)
chr7 (117-162)||(9575207-9575252)
chr7 (14-43)||(13759297-13759326)
chr7 (14-43)||(18663162-18663191)
chr7 (14-42)||(15870327-15870355)
[»] scaffold0062 (1 HSPs)
scaffold0062 (95-162)||(42467-42532)
[»] scaffold0005 (2 HSPs)
scaffold0005 (109-145)||(167676-167712)
scaffold0005 (6-43)||(167758-167795)
[»] chr6 (6 HSPs)
chr6 (7-43)||(6630024-6630060)
chr6 (8-43)||(1635716-1635751)
chr6 (8-43)||(15467100-15467135)
chr6 (96-162)||(22568597-22568662)
chr6 (108-138)||(31880023-31880053)
chr6 (113-162)||(9517540-9517589)
[»] chr8 (5 HSPs)
chr8 (8-43)||(2637729-2637764)
chr8 (14-43)||(19787487-19787516)
chr8 (6-43)||(28276124-28276161)
chr8 (14-43)||(30832104-30832133)
chr8 (14-42)||(37528092-37528120)
[»] chr5 (2 HSPs)
chr5 (8-43)||(24661910-24661945)
chr5 (14-43)||(25401663-25401692)
[»] chr3 (2 HSPs)
chr3 (8-43)||(5509068-5509103)
chr3 (14-43)||(16245054-16245083)


Alignment Details
Target: scaffold0008 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 55683 - 55832
Alignment:
Q  95 cggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggata--------------taagcatccagatagaaataa 180  Q
    ||||||||||| |||||||||||||||||||||||||||| ||   ||||| || ||||||||||              ||||||||||||| | |||||    
T  55683 cggtatcttttgtctagtttactaatcacttacttcctagccataaagttattagtataaggatacaactatcaatatataagcatccagattgtaataa 55782  T
Q  181 caaaattaaaccttgtcacaaggaagtccaaggaagtggaaaggggagaa 230  Q
    ||||||||| || |||||||||||||||  ||||||||||||||||||||    
T  55783 caaaattaagccctgtcacaaggaagtctgaggaagtggaaaggggagaa 55832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 55596 - 55631
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  55596 agattttactcaatattagtaatgtcacctcctaag 55631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 28766074 - 28766128
Alignment:
Q  108 ctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||    
T  28766074 ctagtttactaatcacttacttcctagacagatagttactaatataaggaaataa 28766128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 11465368 - 11465303
Alignment:
Q  97 gtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||  |||||||||| ||||||| |||||||||||| ||||||| || |||||||||||||    
T  11465368 gtatctttcgtctagtttaccaatcactgacttcctagacatgtagttattagtataaggatataa 11465303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 29850123 - 29850187
Alignment:
Q  98 tatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||  |||||||||||||||||||||||||||||||  |||||| || |||||||| ||||    
T  29850123 tatctttcgtctagtttactaatcacttacttcctagacaaatagttactagtataaggacataa 29850187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 28605452 - 28605401
Alignment:
Q  111 gtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||||||||||||||| |||||| ||||||| || ||||| |||||||    
T  28605452 gtttactaatcacttacttcatagacaagtagttattagtataaagatataa 28605401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 28765997 - 28766032
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28765997 agattttactcaatattagtaatgtcacctcctaag 28766032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 29031965 - 29032031
Alignment:
Q  95 cggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||||  ||||||| | ||||||||||||||||| | ||||||||| || |||||||||||||    
T  29031965 cggtatctttcgtctagtt-attaatcacttacttcctaaataggtagttattagtataaggatataa 29032031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 24380992 - 24381058
Alignment:
Q  96 ggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||||  | ||||||| |||||| |||||||| ||||||||| ||| || |||||||||||||    
T  24380992 ggtatctttcgtttagtttagtaatcaattacttcccagacaggtatttattagtataaggatataa 24381058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 28605536 - 28605507
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  28605536 tactcaatattagtaatgtcacctcctaag 28605507  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 32086072 - 32086101
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  32086072 tactcaatattagtaatgtcacctcctaag 32086101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 32086150 - 32086195
Alignment:
Q  117 taatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||||||||||| ||| ||||||| || |||||||||||||    
T  32086150 taatcacttacttcctatacatgtagttattagtataaggatataa 32086195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 19927831 - 19927776
Alignment:
Q  107 tctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||||||||||||||||||| |||||| ||||||| || |||||||||||||    
T  19927831 tctagtttactaatcacttacttcatagacaagtagttattagtataaggatataa 19927776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 17276878 - 17276942
Alignment:
Q  96 ggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatat 160  Q
    |||||||||  ||||||||||||||||| ||||||||||| | ||||||| || |||||||||||    
T  17276878 ggtatctttcgtctagtttactaatcacatacttcctagatatgtagttattagtataaggatat 17276942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 22351219 - 22351155
Alignment:
Q  98 tatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||  ||||||||||||||||| |||||| |||||| ||||||| || |||||||||||||    
T  22351219 tatctttcgtctagtttactaatcacgtacttcttagacaagtagttactagtataaggatataa 22351155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 11781076 - 11781109
Alignment:
Q  10 attatactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||||||    
T  11781076 attatactcaatattagtaatgtcacctcctaag 11781109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Original strand, 14649580 - 14649616
Alignment:
Q  109 tagtttactaatcacttacttcctagacaggtagtta 145  Q
    |||||||||||||| ||||||||||||||||||||||    
T  14649580 tagtttactaatcatttacttcctagacaggtagtta 14649616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 5680001 - 5680107
Alignment:
Q  95 cggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatata-aggatataagcatccagatagaaataacaaaattaaacct 193  Q
    ||||||||||| ||||||| | ||||||||||||||||||| |||||| || ||||||| | ||||||| ||||  ||||| |||| ||| ||||  | |    
T  5680001 cggtatcttttgtctagtt-attaatcacttacttcctagataggtagatattaatatacaagatataaacatcatgatagtaatatcaatattaggcat 5680099  T
Q  194 tgtcacaa 201  Q
    ||||||||    
T  5680100 tgtcacaa 5680107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 22172874 - 22172819
Alignment:
Q  107 tctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||||||||||||| ||||||| | | ||||||| || |||||||||||||    
T  22172874 tctagtttactaatcacttgcttcctaaatatgtagttattagtataaggatataa 22172819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 25024146 - 25024181
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25024146 agattttactcaatattagtaatgtcacctcctaag 25024181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 5679944 - 5679973
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  5679944 tactcaatattagtaatgtcacctcctaag 5679973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 14649497 - 14649534
Alignment:
Q  6 gtagattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  14649497 gtagattttactcaataatagtaatgtcacctcctaag 14649534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 19635906 - 19635877
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  19635906 tactcaatattagtaatgtcacctcctaag 19635877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 24638819 - 24638790
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  24638819 tactcaatattagtaatgtcacctcctaag 24638790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 22665245 - 22665300
Alignment:
Q  107 tctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||    
T  22665245 tctagtttactaatcacttacttcctagacaagtaattattagtataaggatataa 22665300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 17120878 - 17120843
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  17120878 agattttactcaatattagtaatgtcacctcctaag 17120843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 33191467 - 33191533
Alignment:
Q  95 cggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||||  ||||||| | |||||| |||||| ||||||||||||||| |||||||| |||||||    
T  33191467 cggtatctttcgtctagtt-attaatcatttactttctagacaggtagttattaatataaagatataa 33191533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 9787260 - 9787223
Alignment:
Q  108 ctagtttactaatcacttacttcctagacaggtagtta 145  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  9787260 ctagtttattaatcacttacttcctagacagatagtta 9787223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 4987300 - 4987364
Alignment:
Q  97 gtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||    
T  4987300 gtatctttcgtctagtttactaatcacttacttcc-agacaggtagttattagtataagggtataa 4987364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 4991398 - 4991462
Alignment:
Q  97 gtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||  ||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||    
T  4991398 gtatctttcgtctagtttactaatcacttacttcc-agacaggtagttattagtataagggtataa 4991462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 10586241 - 10586176
Alignment:
Q  97 gtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||| ||| || ||||| |||||||    
T  10586241 gtatctttcgtctagtttactaatcacttacttcctagacatgtaattattagtataaagatataa 10586176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 9131531 - 9131568
Alignment:
Q  6 gtagattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  9131531 gtagattttactcaatattagtaatgtcacctcctaag 9131568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 17152364 - 17152319
Alignment:
Q  98 tatcttttttctagtttactaatcacttacttcctagacaggtagt 143  Q
    ||||||| |||||||| ||||||||||||||||||||| |||||||    
T  17152364 tatctttcttctagttcactaatcacttacttcctagaaaggtagt 17152319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 7397873 - 7397908
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  7397873 agattttactcaatattagtaatgtcacctcctaag 7397908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 9730979 - 9730944
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9730979 agattttactcaatattagtaatgtcacctcctaag 9730944  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 15870416 - 15870466
Alignment:
Q  112 tttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||||| |||||||| |||||||||||||| || |||||||| ||||    
T  15870416 tttactaatcccttacttcttagacaggtagttattagtataaggacataa 15870466  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 3190425 - 3190396
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  3190425 tactcaatattagtaatgtcacctcctaag 3190396  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 4987241 - 4987270
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  4987241 tactcaatattagtaatgtcacctcctaag 4987270  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 4991339 - 4991368
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  4991339 tactcaatattagtaatgtcacctcctaag 4991368  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 9575207 - 9575252
Alignment:
Q  117 taatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||||||||||| |||||||||| | || |||||||||||||    
T  9575207 taatcacttacttccttgacaggtagtcattagtataaggatataa 9575252  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 13759326 - 13759297
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  13759326 tactcaatattagtaatgtcacctcctaag 13759297  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 18663162 - 18663191
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  18663162 tactcaatattagtaatgtcacctcctaag 18663191  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 15870327 - 15870355
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaa 42  Q
    |||||||||||||||||||||||||||||    
T  15870327 tactcaatattagtaatgtcacctcctaa 15870355  T

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Target: scaffold0062 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 42532 - 42467
Alignment:
Q  95 cggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    ||||||||||| ||||||||| |||||| |||||||||  ||||||||||| || |||||||||||||    
T  42532 cggtatcttttgtctagtttaataatcatttacttcct--acaggtagttattagtataaggatataa 42467  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 167712 - 167676
Alignment:
Q  109 tagtttactaatcacttacttcctagacaggtagtta 145  Q
    |||||||||||||| ||||||||||||||||||||||    
T  167712 tagtttactaatcatttacttcctagacaggtagtta 167676  T

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Target: scaffold0005; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 167795 - 167758
Alignment:
Q  6 gtagattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  167795 gtagattttactcaataatagtaatgtcacctcctaag 167758  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 6630060 - 6630024
Alignment:
Q  7 tagattatactcaatattagtaatgtcacctcctaag 43  Q
    |||||| ||||||||||||||||||||||||||||||    
T  6630060 tagattttactcaatattagtaatgtcacctcctaag 6630024  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 1635716 - 1635751
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1635716 agattttactcaatattagtaatgtcacctcctaag 1635751  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 15467100 - 15467135
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15467100 agattttactcaatattagtaatgtcacctcctaag 15467135  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 162
Target Start/End: Original strand, 22568597 - 22568662
Alignment:
Q  96 ggtatcttttttctagtttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||||  ||||||| ||||| ||||||||||||||| || ||| || ||||||||||||||||    
T  22568597 ggtatctttcgtctagtt-actaagcacttacttcctagatagatagatattaatataaggatataa 22568662  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 138
Target Start/End: Complemental strand, 31880053 - 31880023
Alignment:
Q  108 ctagtttactaatcacttacttcctagacag 138  Q
    |||||||||||||||||||||||||||||||    
T  31880053 ctagtttactaatcacttacttcctagacag 31880023  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 9517540 - 9517589
Alignment:
Q  113 ttactaatcacttacttcctagacaggtagttagtaatataaggatataa 162  Q
    |||||||||||||||||||||||||| ||||||  | || ||||||||||    
T  9517540 ttactaatcacttacttcctagacagatagttatgagtaaaaggatataa 9517589  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 2637729 - 2637764
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  2637729 agattttactcaatattagtaatgtcacctcctaag 2637764  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 19787487 - 19787516
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  19787487 tactcaatattagtaatgtcacctcctaag 19787516  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 28276161 - 28276124
Alignment:
Q  6 gtagattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  28276161 gtagattttactcaatattattaatgtcacctcctaag 28276124  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 30832104 - 30832133
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  30832104 tactcaatattagtaatgtcacctcctaag 30832133  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 37528120 - 37528092
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaa 42  Q
    |||||||||||||||||||||||||||||    
T  37528120 tactcaatattagtaatgtcacctcctaa 37528092  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 24661945 - 24661910
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24661945 agattttactcaatattagtaatgtcacctcctaag 24661910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 25401692 - 25401663
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  25401692 tactcaatattagtaatgtcacctcctaag 25401663  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 5509068 - 5509103
Alignment:
Q  8 agattatactcaatattagtaatgtcacctcctaag 43  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5509068 agattttactcaatattagtaatgtcacctcctaag 5509103  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 16245083 - 16245054
Alignment:
Q  14 tactcaatattagtaatgtcacctcctaag 43  Q
    ||||||||||||||||||||||||||||||    
T  16245083 tactcaatattagtaatgtcacctcctaag 16245054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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