View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_44 (Length: 252)
Name: NF16543_low_44
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_44 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 7484033 - 7483797
Alignment:
| Q |
16 |
ttctgcaatggatgatgatataaagtcaaacattgaagaagaaccctccaattttgactcttctgaacttgacttaacactcaagctttagatgttcatt |
115 |
Q |
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| T |
7484033 |
ttctgcaatggatgatgatataaagtcaaacattgaagaagaaccctccaattttgactcttctgaacttgacttaacactcaagctttagatgttcatt |
7483934 |
T |
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| Q |
116 |
ttttacattttctttccatgtgttatgtttaattttattgctactttcctgttgaagttatgtattggtattttctcttgttttgtcaaattataatata |
215 |
Q |
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| T |
7483933 |
ttttacattttctttccatgtgttatgtttaattttattgctactttcctgttgaagttatgtattggtattttctcttgttttgtcaaattataatata |
7483834 |
T |
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| Q |
216 |
ttttaagaataaattattagtgttaatctggtttttc |
252 |
Q |
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| T |
7483833 |
ttttaagaataaattattagtgtcaatctggtttttc |
7483797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 37 - 252
Target Start/End: Complemental strand, 7490754 - 7490554
Alignment:
| Q |
37 |
aaagtcaaacattgaagaagaaccctccaattttgactcttctgaacttgacttaacactcaagctttagatgttcattttttacattttctttccatgt |
136 |
Q |
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| T |
7490754 |
aaagtcaaacattgaagaagaaccctccgattcagaatcttctggactggatttaacactcaggctttagattttgattttttacattttgtttc----- |
7490660 |
T |
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| Q |
137 |
gttatgtttaattttattgctactttcctgttgaagttatgtattggtattttctcttgttttgtcaaattataatatattttaagaataaattattagt |
236 |
Q |
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| T |
7490659 |
----------attttattgctgctttcctgttgaagttatgtattggtattttctcttgttatgtcaagttactttatattttaagaataaattattaat |
7490570 |
T |
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| Q |
237 |
gttaatctggtttttc |
252 |
Q |
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| T |
7490569 |
gttaatctggtttttc |
7490554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 7498336 - 7498247
Alignment:
| Q |
162 |
tcctgttgaagttatgtattggtattttctcttgttttgtcaaattataatatattttaagaataaattattagtgttaatctggtttttc |
252 |
Q |
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| T |
7498336 |
tcctgttgaagttatgtattggtattttctcttgttctgtcaaattataatatgtttcaagaataaattattagtg-taatctggtttttc |
7498247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 41 - 174
Target Start/End: Complemental strand, 7498495 - 7498358
Alignment:
| Q |
41 |
tcaaacattgaagaagaaccctccaattttgactcttctgaacttgacttaacactcaagctttagatgttcattttttacattttctttccat----gt |
136 |
Q |
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| T |
7498495 |
tcaaacattgaagaagaaccctccgatttggattcgtctggactcgacttaacacttaggctttaaatattcatgttttacattttgttcccatctcaat |
7498396 |
T |
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| Q |
137 |
gttatgtttaattttattgctactttcctgttgaagtt |
174 |
Q |
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| T |
7498395 |
gttatggttaattttattgctactctcctgttgaagtt |
7498358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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