View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_46 (Length: 244)
Name: NF16543_low_46
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_46 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 9322 - 9476
Alignment:
| Q |
74 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
173 |
Q |
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| T |
9322 |
caatcttaacaaaattatcattaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
9421 |
T |
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| Q |
174 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttat |
228 |
Q |
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| T |
9422 |
gaaaatgtagcatgtagagtccttaaactttttctctcttacaaacctatgttat |
9476 |
T |
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Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 16420610 - 16420764
Alignment:
| Q |
74 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
173 |
Q |
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| T |
16420610 |
caatcttaacaaaattatcattaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
16420709 |
T |
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| Q |
174 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttat |
228 |
Q |
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| T |
16420710 |
gaaaatgtagcatgtagagtccttaaactttttctctcttacaaacctatgttat |
16420764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 28383210 - 28383342
Alignment:
| Q |
75 |
aatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgtag |
174 |
Q |
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| T |
28383210 |
aatcttaacatagttatcatcaccaagtaagaatcctactaatatttttattgtcctttttattattggagaatcaaaatcacccctcttatttttgtag |
28383309 |
T |
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| Q |
175 |
aaaacgtagcatgtagagtccttaaactttttc |
207 |
Q |
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| T |
28383310 |
aaaatgtagcatgtagagtccttaaactctttc |
28383342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 28387875 - 28387964
Alignment:
| Q |
117 |
tattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgtagaaaacgtagcatgtagagtccttaaactttttc |
207 |
Q |
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| T |
28387875 |
tatttttattgtcctttttattattggagaatcaaaattacccctcttatttttctagaaaacgtagcatgtagagt-cttaaactctttc |
28387964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 28387571 - 28387621
Alignment:
| Q |
75 |
aatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttat |
125 |
Q |
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| T |
28387571 |
aatcttaacatagttatcatcaccaagtaagaatcctattaatatttttat |
28387621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 74 - 228
Target Start/End: Original strand, 3508791 - 3508945
Alignment:
| Q |
74 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
173 |
Q |
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| T |
3508791 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
3508890 |
T |
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| Q |
174 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttat |
228 |
Q |
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| T |
3508891 |
gaaaacataacatgtagagtccttaaactttttctctcttacaaacctatgttat |
3508945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 5538155 - 5538001
Alignment:
| Q |
74 |
caatcttaacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcataattttgta |
173 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5538155 |
caatcttgacaaaattatcatcaccaagtaagaatcctactagtattcttattgtcatttttattattaaagaatcaaaatcatcaatcatatttttgta |
5538056 |
T |
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| Q |
174 |
gaaaacgtagcatgtagagtccttaaactttttctctcttacaaacctatgttat |
228 |
Q |
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| T |
5538055 |
gaaaacataacatgtagagtccttaaactttttctctcttacaaacctatgttat |
5538001 |
T |
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