View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16543_low_48 (Length: 239)
Name: NF16543_low_48
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_48 |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30142300 - 30142538
Alignment:
| Q |
1 |
ttttttggcccgatacttgtaaggcccgtttttcccatgtaatatnnnnnnnnnnnnncacagctagggctgctcattctgcattcacgtttcagaaaat |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30142300 |
tttttcggcccgatacttgtaaggcccgtttttcccatgtaatataaaaactacaaaacacagctagggctgctcagtctgcattcacgtttcagaaaat |
30142399 |
T |
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| Q |
101 |
agaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaaggaactttgttgttactcttgaggttctgttttaatagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30142400 |
agaaaccctaaggcagccgcttgctatggagaactaatctctctatcgatccattggtgaaggaactttgttgttactcttgaggttcggttttaatagc |
30142499 |
T |
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| Q |
201 |
aatttgttatgtttatgctgatcatatatcaattttctt |
239 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
30142500 |
aatttgttatgtttaagctgatcatatatcaattttctt |
30142538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 65 - 239
Target Start/End: Original strand, 19800571 - 19800745
Alignment:
| Q |
65 |
tagggctgctcattctgcattcacgtttcagaaaatagaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaagga |
164 |
Q |
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| T |
19800571 |
tagggctgctcattctgcattcacgtttcagaaaatagaaatcctaaggcaaccgcttgctatggagaactaatctctctttcgatccattggtgaagga |
19800670 |
T |
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| Q |
165 |
actttgttgttactcttgaggttctgttttaatagcaatttgttatgtttatgctgatcatatatcaattttctt |
239 |
Q |
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| T |
19800671 |
actttgttgttactcttgaggttcggttttaatagcaatttgttatgtttatgctgatcatatatcaattttctt |
19800745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 19800491 - 19800535
Alignment:
| Q |
1 |
ttttttggcccgatacttgtaaggcccgtttttcccatgtaatat |
45 |
Q |
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| T |
19800491 |
tttttcggcccgatactcgtaaggcccgtttttcccatgtaatat |
19800535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30742409 - 30742171
Alignment:
| Q |
1 |
ttttttggcccgatacttgtaaggcccgtttttcccatgtaatatnnnnnnnnnnnnncacagctagggctgctcattctgcattcacgtttcagaaaat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30742409 |
tttttcggcccgatacttgtaaggcccgtttttcccatgtaagataaaaactaaaaaacacagctagggctgctcattctgcattcacgtttcagaaaat |
30742310 |
T |
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| Q |
101 |
agaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaaggaactttgttgttactcttgaggttctgttttaatagc |
200 |
Q |
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| T |
30742309 |
agaaaccctaaggcagccgcttgctatggagaactaatctctctttcgatccattggcaaaggaactttgttgtgactcttgaggttcggttttaatagc |
30742210 |
T |
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| Q |
201 |
aatttgttatgtttatgctgatcatatatcaattttctt |
239 |
Q |
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| T |
30742209 |
aatttgttatgtttatgctgatcatatatcaattttctt |
30742171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 108 - 239
Target Start/End: Original strand, 22303939 - 22304070
Alignment:
| Q |
108 |
ctaaggcagccgcttgctatggagaactaatctctctttcgatccattggtgaaggaactttgttgttactcttgaggttctgttttaatagcaatttgt |
207 |
Q |
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|||||| ||| | ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22303939 |
ctaaggtagctggttgctatggagaattaatctctctttcgatccattggtgacggaactttgttgttactcttgaggttcggttttaatagcaatttgt |
22304038 |
T |
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| Q |
208 |
tatgtttatgctgatcatatatcaattttctt |
239 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
22304039 |
tatgtttatgctgatcatatatcaattttctt |
22304070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 22303278 - 22303389
Alignment:
| Q |
1 |
ttttttggcccgatacttgtaaggcccgtttttcccatgtaatatnnnnnnnnnnnnncacagctagggctgctcattctgcattcacgtttcagaaaat |
100 |
Q |
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||||| ||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22303278 |
tttttcggcccgatacttgcaaagcccgttgttcccatgtaatataaaaactaaaaaacacagctagggctgctcattctgcattcacgtttcagaaaat |
22303377 |
T |
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| Q |
101 |
agaaaccctaag |
112 |
Q |
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| T |
22303378 |
agaaaccctaag |
22303389 |
T |
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