View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16543_low_49 (Length: 238)

Name: NF16543_low_49
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16543_low_49
NF16543_low_49
[»] chr4 (3 HSPs)
chr4 (13-238)||(42846640-42846865)
chr4 (13-238)||(42849627-42849852)
chr4 (13-238)||(42839832-42840057)
[»] chr3 (2 HSPs)
chr3 (13-184)||(33931414-33931585)
chr3 (13-184)||(33938219-33938390)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 42846640 - 42846865
Alignment:
Q  13 catcaccatccaaatcaaatcttttaatcatcaatttgcattctttaatggacttagaatcccccaactttttcaacatcctcttcaaactctttggtgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||||| ||    
T  42846640 catcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaacatcctcttcaaactttttggcgt 42846739  T
Q  113 tatgaatccacatccttcattatcatacatttcaaaagcttccgtcaaatccttcaatttttcctcctctccccctgattccattaacgtaatcaaatct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42846740 tatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcctcctctccccctgattccattaacgtaatcaaatct 42846839  T
Q  213 cccaaactcaataacccatcatcatc 238  Q
    ||||||||||||||||||||| ||||    
T  42846840 cccaaactcaataacccatcaccatc 42846865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 42849627 - 42849852
Alignment:
Q  13 catcaccatccaaatcaaatcttttaatcatcaatttgcattctttaatggacttagaatcccccaactttttcaacatcctcttcaaactctttggtgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  42849627 catcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaacatcctcttcaaactttttggtgt 42849726  T
Q  113 tatgaatccacatccttcattatcatacatttcaaaagcttccgtcaaatccttcaatttttcctcctctccccctgattccattaacgtaatcaaatct 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | | | ||||||||     
T  42849727 tatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccataagctttatcaaatcc 42849826  T
Q  213 cccaaactcaataacccatcatcatc 238  Q
     ||||||||||||| |||||| ||||    
T  42849827 tccaaactcaataatccatcaccatc 42849852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 42839832 - 42840057
Alignment:
Q  13 catcaccatccaaatcaaatcttttaatcatcaatttgcattctttaatggacttagaatcccccaactttttcaacatcctcttcaaactctttggtgt 112  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42839832 catcaccatccaaatcaaatcttttaatcatcactttacattcttcaatggacttagaatcccccaactttttcaacatcctcttcaaactctttggtgt 42839931  T
Q  113 tatgaatccacatccttcattatcatacatttcaaaagcttccgtcaaatccttcaatttttcctcctctccccctgattccattaacgtaatcaaatct 212  Q
    |||| | ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||  ||||||||     
T  42839932 tatgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccctgattccattagcgctatcaaatcc 42840031  T
Q  213 cccaaactcaataacccatcatcatc 238  Q
     |||||||||||||||||||| ||||    
T  42840032 tccaaactcaataacccatcaccatc 42840057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 33931414 - 33931585
Alignment:
Q  13 catcaccatccaaatcaaatcttttaatcatcaatttgcattctttaatggacttagaatcccccaactttttcaacatcctcttcaaactctttggtgt 112  Q
    |||| ||||||||||||||   |||||||||   ||| ||||| | ||| |||||||| || |||| ||| || | ||||||||||||||||||||||||    
T  33931414 catccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaagcatcctcttcaaactctttggtgt 33931513  T
Q  113 tatgaatccacatccttcattatcatacatttcaaaagcttccgtcaaatccttcaatttttcctcctctcc 184  Q
    ||| || |||||    ||| |||||||||| ||||| |||||  ||||||||||||| ||||  ||||||||    
T  33931514 tataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctcc 33931585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 33938219 - 33938390
Alignment:
Q  13 catcaccatccaaatcaaatcttttaatcatcaatttgcattctttaatggacttagaatcccccaactttttcaacatcctcttcaaactctttggtgt 112  Q
    |||| ||||||||||||||   |||||||||   ||| ||||| | ||| |||||||| || |||| ||| || | ||||||||||||||||||||||||    
T  33938219 catccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaagcatcctcttcaaactctttggtgt 33938318  T
Q  113 tatgaatccacatccttcattatcatacatttcaaaagcttccgtcaaatccttcaatttttcctcctctcc 184  Q
    ||| || |||||    ||| |||||||||| ||||| |||||  ||||||||||||| ||||  ||||||||    
T  33938319 tataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaacttttgttcctctcc 33938390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University