View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16543_low_6 (Length: 703)
Name: NF16543_low_6
Description: NF16543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16543_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 10 - 618
Target Start/End: Original strand, 41390166 - 41390774
Alignment:
| Q |
10 |
aggagcagagagaagcaggtatgtaattgagaaccatggtagaatccaatttagaaaatttaatttaattaagagaatgattgattatttgaaattgata |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41390166 |
aggaacagagagaagcaggtatgtaattgagaaccatggtagaatccaatttagaaaatttaatttaattaagagaatgattgattatttgaaattgata |
41390265 |
T |
|
| Q |
110 |
gaaattctaaaagtttattgcaatatgatatactatattgcaacaatacctaaacgaacaaattcattagtataacaagtgtacttaatcgttacaagta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41390266 |
gaaattctaaaagtttattgcaatatgatatactatatcgcaacaatacctaaacgaacaaattcattagtataacaagtgtaattaatcgttacaagta |
41390365 |
T |
|
| Q |
210 |
ataattcgtagattgggggtgtactgaatccttacaagtaataattattggtagaatggttttaacaaactctaactatatataataggtcctttggaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41390366 |
ataattcgtagattgggggtgtactgaatccttacaagtaataattattggtagaatggttttaacaaactctaactatatataataggtcctttggaag |
41390465 |
T |
|
| Q |
310 |
aagaggaaatgctgggaaggatcgcggtggtggaagtttccgatctctgtcatggacaatggcgagaaattggtctgctgcaaaacaaatccacgccatg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41390466 |
aagaggaaatgctgggaaggatcgcggtggtggaagtttccgatctctgtcatggacaatggcgagaaattggtctgctgcaaaacaaatccacgccatg |
41390565 |
T |
|
| Q |
410 |
tcttcaaatttggctgcaccacgcggcgctgaagcaactggtttggcttcgccactatacataatgagtactatattggtttttgttatgtggactcttg |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41390566 |
tcttcaaatttggctgcaccacgcggcgctgaagcaactggcttggcttcgccactatacataatgagtactatattggtttttgttatgtggactcttg |
41390665 |
T |
|
| Q |
510 |
cggcagcaattccttgtcaagagaggaatgggcttggtagtcatctaccattcccaaggcaattggcttgggcacaacctatgattggtttgcaagataa |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41390666 |
cggcagcaattccttgtcaagagaggaatgggctaggtagtcatctaccattcccaaggcaattggcttgggcacaacctatgattggtttgcaagataa |
41390765 |
T |
|
| Q |
610 |
gattgcaga |
618 |
Q |
| |
|
||||||||| |
|
|
| T |
41390766 |
gattgcaga |
41390774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 45518849 - 45518885
Alignment:
| Q |
76 |
aattaagagaatgattgattatttgaaattgatagaa |
112 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
45518849 |
aattgagagaaagattgattatttgaaattgatagaa |
45518885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University