View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16544_high_6 (Length: 309)
Name: NF16544_high_6
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16544_high_6 |
 | |
|
| [»] scaffold0221 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 14458211 - 14457918
Alignment:
| Q |
1 |
cagaaaaagtgatagcttcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggacaaatctagggaccccaaaaatgacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14458211 |
cagaaaaagtgatagcttcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggacaaatctagggaccccaaaaatgacaa |
14458112 |
T |
|
| Q |
101 |
ggaagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14458111 |
ggaagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggcca |
14458012 |
T |
|
| Q |
201 |
gttatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14458011 |
gttatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggt |
14457918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 294
Target Start/End: Original strand, 14493141 - 14493432
Alignment:
| Q |
3 |
gaaaaagtgatagcttcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggacaaatctagggaccccaaaaatgacaagg |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |||| ||||||||| | |||||| ||||||||||||| |
|
|
| T |
14493141 |
gaaaaagtcatagcttcaaaagttgtcatatggcctgtatatggaatgacacccgagaggttgttatcggacaaatccaaggaccctaaaaatgacaagg |
14493240 |
T |
|
| Q |
103 |
aagacaagcttgaaggaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggccagt |
202 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| ||| | |
|
|
| T |
14493241 |
aagacaagcttgaaggaattgttccggaaagttggttgtttgagagatcaagggatgataattgaagcagatttgaaatggttttaggaatttgaccact |
14493340 |
T |
|
| Q |
203 |
tatatggtttcttgacaagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggt |
294 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||| |||||||| ||| ||||||| |||| |||||||| |
|
|
| T |
14493341 |
tatatggtttcttgacaagttgagaaccaccaaaccaaatagttttgttatctcatttggaatatttccactgaagttattattagaaaggt |
14493432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 14468738 - 14469014
Alignment:
| Q |
18 |
tcaaaagttgtcatatggcctgtataaggaatgacaccagacaggttattattggacaaatctagggaccccaaaaatgacaaggaagacaagcttgaag |
117 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||| ||||| || | |||||| | |||| |||||||||||||||||||| ||| ||| ||| |
|
|
| T |
14468738 |
tcaaaggttgtcatttggcctgtgtaaggaatgacaccctgaaggttgttgtgggacaagtttaggccccccaaaaatgacaaggaaggcaaacttaaag |
14468837 |
T |
|
| Q |
118 |
gaattggtccagaaagttggttgtttgagagatcaagagatgataattgaagcagatttgacatggtttcgtgaatttggccagttatatggtttcttga |
217 |
Q |
| |
|
|||| ||||||||| ||||| | ||||||||||||||| || |||| ||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
14468838 |
gaatcttaccagaaagtcggttgctcgagagatcaagagattctagttgatgcagatttgacatggtttcaggaattttgccagttatatggtttcttga |
14468937 |
T |
|
| Q |
218 |
caagttgagaacaactaaaccggatagttttgttatttcattgggaatattcccagtgaagttgttatcagaaaggt |
294 |
Q |
| |
|
||||||||||| | ||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
14468938 |
caagttgagaatcatcaaaccagatagttttgttatttcattgggaatatttccaatgaagttgttatgagaaaggt |
14469014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 10245 - 10164
Alignment:
| Q |
61 |
ggttattattggacaaatctagggaccccaaaaatgacaaggaagacaagcttgaaggaattggtccagaaagttggttgtt |
142 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10245 |
ggttattattggacaaatctagggaccccaaaaatgacaaggaagacaagcttgaaggaattgttccagaaagttggttgtt |
10164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University