View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16544_high_7 (Length: 304)
Name: NF16544_high_7
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16544_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 52093373 - 52093097
Alignment:
| Q |
16 |
ctatggattatagttatgctggaatctttttgtttgttatcaaaatgtcagtttttacaacatttggatcttcaatattcattctatttgaatgatcaag |
115 |
Q |
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| T |
52093373 |
ctatggattatagttatgccggaatctttt-gtttgttatcaaaatgtcagtttttacaacatttggatcttcaatattcattctatttgaatgatcaag |
52093275 |
T |
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| Q |
116 |
at--tgttgggttgtctttggttcttggtaatttggtgtctataaaccttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaa |
213 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52093274 |
atattgttgggttgtctttggttcttggtaatttggtgtctataaaccttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaa |
52093175 |
T |
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| Q |
214 |
ctgtcctttcctcagcgagatcagaagtggtattggaaagttttgtgataagaattgtaattgtttgatggactttgt |
291 |
Q |
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| T |
52093174 |
ctgtcctttcctcagcgagatcagaagtggtattggaaagttttgtgataagaattgtaattgtttgatggactttgt |
52093097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 21 - 291
Target Start/End: Complemental strand, 52083172 - 52082895
Alignment:
| Q |
21 |
gattatagttatgctggaatctttttgtttgttatcaaaatgtcagtttttacaacatttggatcttcaatattcattctatttgaatgatcaaga--tt |
118 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | || |
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| T |
52083172 |
gattatagttatgctggaatctttt-gtctgttatcaaaatgtcaatttttacaacatttggatcttcaatattcgttctatttgaatgatcaatatgtt |
52083074 |
T |
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| Q |
119 |
gttgggttgtctttggttcttggtaatttggtgtctataaaccttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaactgtc |
218 |
Q |
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| T |
52083073 |
gttgggttgtctacggttcttggtagtttgctgtctataaaccttagccattgt---aatatcactgaattaaccttgctgtcactagttaggaactgtc |
52082977 |
T |
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| Q |
219 |
ctttcctcagcgagatca---------gaagtggtattggaaagttttgtgataagaattgtaattgtttgatggactttgt |
291 |
Q |
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||||||||||| |||||| | |||| |||||||||||||||||||||||| | ||||| |||| |||||||||| |
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| T |
52082976 |
ctttcctcagcaagatcataatggaatgcagtgatattggaaagttttgtgataagaactctaattctttgctggactttgt |
52082895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 19468117 - 19468158
Alignment:
| Q |
124 |
gttgtctttggttcttggtaatttggtgtctataaaccttag |
165 |
Q |
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| T |
19468117 |
gttgtctttgtttcttggtgatttagtgtctataaaccttag |
19468158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 8913681 - 8913722
Alignment:
| Q |
124 |
gttgtctttggttcttggtaatttggtgtctataaaccttag |
165 |
Q |
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| T |
8913681 |
gttgtctttgtttcttggtaatttggtgtctataaaccttag |
8913722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 55908337 - 55908378
Alignment:
| Q |
124 |
gttgtctttggttcttggtaatttggtgtctataaaccttag |
165 |
Q |
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| T |
55908337 |
gttgtctttgtttcttggtgatttggtgtctataaaccttag |
55908378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 53761398 - 53761438
Alignment:
| Q |
125 |
ttgtctttggttcttggtaatttggtgtctataaaccttag |
165 |
Q |
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||||||||| |||||||| |||||||||| ||||||||||| |
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| T |
53761398 |
ttgtctttgcttcttggtgatttggtgtccataaaccttag |
53761438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 1037273 - 1037314
Alignment:
| Q |
124 |
gttgtctttggttcttggtaatttggtgtctataaaccttag |
165 |
Q |
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|||||||||| |||||||| |||||||||||||||||||||| |
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| T |
1037273 |
gttgtctttgtttcttggtgatttggtgtctataaaccttag |
1037314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 51764059 - 51764099
Alignment:
| Q |
125 |
ttgtctttggttcttggtaatttggtgtctataaaccttag |
165 |
Q |
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||||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
51764059 |
ttgtctttgtttcttagtaatttggtgtccataaaccttag |
51764099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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