View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16544_low_10 (Length: 309)
Name: NF16544_low_10
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16544_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 2317249 - 2317321
Alignment:
| Q |
176 |
acgaccgatgtcgtcctttgaaaataaaagctcatagaaatccttgttctcatgagtgagacagtgacctaat |
248 |
Q |
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| T |
2317249 |
acgaccgatgtcatcctttgaaaataaaagctcgtagaaatccttgttctcatgagtgagacagtgacctaat |
2317321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 2316153 - 2316222
Alignment:
| Q |
3 |
gagtatccttttatgagctaaagacttattctcggaaattaacgtgcatgatatggactttcttcaacct |
72 |
Q |
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| T |
2316153 |
gagtatccttttatgagccaaagacttattctcagaaaataacaagcattgtatggacttttttcaacct |
2316222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 2316549 - 2316626
Alignment:
| Q |
90 |
ttcacttcattccaccgtatatcacaaatccaaacataaccttaagaaactaagggtccattttcaaagatttgacca |
167 |
Q |
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| T |
2316549 |
ttcacttcattccacccaataccactaacccaaacatatccttaaaaaactaagagttcattttcaaatatttgacca |
2316626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 2317439 - 2317480
Alignment:
| Q |
251 |
gttataacgatgagtgtcacaagtttctaatttctaatacct |
292 |
Q |
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| T |
2317439 |
gttataacgatgagtgtcacaagtttctaatttctactacct |
2317480 |
T |
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