View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16544_low_13 (Length: 283)

Name: NF16544_low_13
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16544_low_13
NF16544_low_13
[»] chr2 (22 HSPs)
chr2 (19-112)||(15407228-15407321)
chr2 (112-208)||(15407399-15407495)
chr2 (233-281)||(21497689-21497737)
chr2 (232-279)||(41542973-41543020)
chr2 (233-281)||(32957534-32957582)
chr2 (233-279)||(30243274-30243320)
chr2 (232-279)||(30089073-30089120)
chr2 (232-279)||(30125677-30125724)
chr2 (232-279)||(34977228-34977275)
chr2 (236-279)||(44694712-44694755)
chr2 (233-279)||(29544651-29544697)
chr2 (233-279)||(35820292-35820338)
chr2 (233-279)||(36359338-36359384)
chr2 (233-279)||(42066736-42066782)
chr2 (243-280)||(40895878-40895915)
chr2 (243-279)||(4833262-4833298)
chr2 (249-281)||(13196722-13196754)
chr2 (233-281)||(19967440-19967488)
chr2 (233-281)||(20200727-20200775)
chr2 (233-277)||(27848184-27848228)
chr2 (233-277)||(42108119-42108163)
chr2 (235-279)||(42791319-42791363)
[»] chr8 (16 HSPs)
chr8 (232-279)||(8717465-8717512)
chr8 (233-279)||(444437-444483)
chr8 (233-283)||(6471531-6471581)
chr8 (243-281)||(29924918-29924956)
chr8 (233-281)||(44084263-44084310)
chr8 (233-279)||(5179817-5179863)
chr8 (233-279)||(12748925-12748971)
chr8 (233-279)||(13357432-13357478)
chr8 (233-279)||(32051523-32051569)
chr8 (233-279)||(37141381-37141427)
chr8 (244-281)||(30694441-30694478)
chr8 (232-281)||(37749989-37750038)
chr8 (236-281)||(44037359-44037404)
chr8 (234-279)||(44794917-44794962)
chr8 (233-277)||(3650546-3650590)
chr8 (233-281)||(26196595-26196643)
[»] chr6 (13 HSPs)
chr6 (233-281)||(28951421-28951469)
chr6 (233-279)||(8629687-8629733)
chr6 (233-279)||(33824905-33824951)
chr6 (233-281)||(21598979-21599027)
chr6 (233-279)||(2617196-2617242)
chr6 (233-279)||(8569733-8569779)
chr6 (233-279)||(9333755-9333801)
chr6 (233-279)||(16390453-16390499)
chr6 (235-279)||(331879-331923)
chr6 (243-283)||(1535323-1535363)
chr6 (243-279)||(12591028-12591064)
chr6 (235-279)||(26356074-26356118)
chr6 (233-281)||(26548273-26548321)
[»] chr4 (11 HSPs)
chr4 (233-279)||(7230304-7230350)
chr4 (233-278)||(34042265-34042310)
chr4 (233-279)||(25101381-25101427)
chr4 (233-279)||(26033299-26033345)
chr4 (233-279)||(28435239-28435285)
chr4 (233-279)||(49041972-49042018)
chr4 (232-281)||(19479467-19479516)
chr4 (233-281)||(3936649-3936697)
chr4 (235-279)||(10148203-10148247)
chr4 (243-279)||(22040674-22040710)
chr4 (237-281)||(50152233-50152277)
[»] chr3 (14 HSPs)
chr3 (233-283)||(3176965-3177014)
chr3 (233-279)||(3755363-3755409)
chr3 (235-279)||(42886502-42886546)
chr3 (232-279)||(52119400-52119447)
chr3 (233-279)||(10926493-10926539)
chr3 (235-281)||(20612270-20612316)
chr3 (233-279)||(29631210-29631256)
chr3 (233-279)||(38130950-38130996)
chr3 (233-279)||(48796209-48796255)
chr3 (233-279)||(48849754-48849800)
chr3 (233-278)||(913591-913636)
chr3 (233-281)||(28965768-28965816)
chr3 (243-279)||(39779048-39779084)
chr3 (249-281)||(45334211-45334243)
[»] chr1 (11 HSPs)
chr1 (233-279)||(34521181-34521227)
chr1 (232-276)||(8094068-8094112)
chr1 (233-277)||(34595898-34595942)
chr1 (239-283)||(47070868-47070912)
chr1 (233-283)||(422567-422617)
chr1 (233-279)||(7925388-7925433)
chr1 (233-283)||(11913750-11913800)
chr1 (233-279)||(27533267-27533313)
chr1 (233-279)||(47417807-47417853)
chr1 (233-281)||(4715549-4715597)
chr1 (243-283)||(12268985-12269025)
[»] chr7 (10 HSPs)
chr7 (232-277)||(26529681-26529726)
chr7 (232-279)||(48629055-48629102)
chr7 (235-281)||(7670456-7670502)
chr7 (235-277)||(19988688-19988730)
chr7 (233-279)||(27462427-27462473)
chr7 (232-277)||(2962716-2962761)
chr7 (232-281)||(9522934-9522983)
chr7 (232-281)||(10326976-10327024)
chr7 (232-276)||(42095933-42095977)
chr7 (233-281)||(45088898-45088945)
[»] chr5 (11 HSPs)
chr5 (232-281)||(12909156-12909205)
chr5 (235-282)||(42473915-42473962)
chr5 (233-279)||(11720918-11720963)
chr5 (243-281)||(18589868-18589906)
chr5 (233-279)||(22522792-22522838)
chr5 (233-279)||(25979868-25979914)
chr5 (233-279)||(36736812-36736858)
chr5 (233-279)||(40715940-40715986)
chr5 (232-277)||(12670064-12670109)
chr5 (244-281)||(27903135-27903172)
chr5 (233-281)||(6894118-6894166)
[»] scaffold0983 (1 HSPs)
scaffold0983 (235-273)||(3308-3346)
[»] scaffold0312 (1 HSPs)
scaffold0312 (233-283)||(7955-8005)
[»] scaffold1149 (1 HSPs)
scaffold1149 (235-279)||(2356-2400)
[»] scaffold1127 (1 HSPs)
scaffold1127 (243-283)||(1166-1206)
[»] scaffold1120 (1 HSPs)
scaffold1120 (243-283)||(1933-1973)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 15407228 - 15407321
Alignment:
Q  19 gatgatccattatttttgacatgtaatcccactcatataaacggtatgaaaggcaaattagagagtttttattggttgtcatgtaaaagatact 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15407228 gatgatccattatttttgacatgtaatcccactcatataaacggtatgaaagacaaattagagagtttttattggttgtcatgtaaaagatact 15407321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 15407399 - 15407495
Alignment:
Q  112 tcgaatccacaattcatcacttctcaacacttaggtatgtgagtttaccacatactaacgatgcacaatttaataagcagttaagtgataatacaag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15407399 tcgaatccacaattcatcacttctcaacacttaggtatgtgagttcaccacatactaacgatgcacaatttaataagtagttaagtgataatacaag 15407495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 21497737 - 21497689
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  21497737 tggtggccgaggtttaaacctcgaaccttgcatatattatgcattgttc 21497689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 41542973 - 41543020
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  41542973 atggtggccgaggtttaaaccccgaaccttacatatattatgcattgt 41543020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 32957534 - 32957582
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||||||||||||||| | |||| |||||||||||||||||||    
T  32957534 tggtggccgaggtttaaaccccaaaccttacatatattatgcattgttc 32957582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 30243320 - 30243274
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  30243320 tggtggccgaggtttgaaccccgaaccttgtatatattatgcattgt 30243274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 30089120 - 30089073
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||    
T  30089120 atggtggccgaggtttgaaccccggaccttgtatatattatgcattgt 30089073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 30125724 - 30125677
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||||||||| |||||||  ||||| ||||||||||||||||    
T  30125724 atggtggccgaggtttgaaccccggaccttgtatatattatgcattgt 30125677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 34977275 - 34977228
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||    
T  34977275 atggtggccggggtttaaactccggaccttgcatatattatgcattgt 34977228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 279
Target Start/End: Complemental strand, 44694755 - 44694712
Alignment:
Q  236 tggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||| ||||| |||||||| ||||||||||||||||||||||    
T  44694755 tggccggggtttgaaccccgagccttgcatatattatgcattgt 44694712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 29544697 - 29544651
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  29544697 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 29544651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 35820292 - 35820338
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||    
T  35820292 tggtggccgaggtttgaaccccggaccttgcatgtattatgcattgt 35820338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 36359384 - 36359338
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||| |||||| |||||||  ||||||||||||||||||||||    
T  36359384 tggtggccaaggtttgaaccccggaccttgcatatattatgcattgt 36359338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 42066782 - 42066736
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||||||| ||||||||  ||||||||||||| ||||||||    
T  42066782 tggtggccgaggttcaaaccccggaccttgcatatattgtgcattgt 42066736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 40895915 - 40895878
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgtt 280  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  40895915 ggtttaaaccccgaaccttccatatattatgcattgtt 40895878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 4833298 - 4833262
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  4833298 ggtttgaaccccgatccttgcatattttatgcattgt 4833262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 13196754 - 13196722
Alignment:
Q  249 aaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||| ||||||||||||||||||||||||    
T  13196754 aaccccgaaccttgcatatattatgcattgttc 13196722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 19967488 - 19967440
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||| |||||||| ||| |||| ||||||| ||||||||||||||||    
T  19967488 tggtggtcgaggtttgaactccgaaccttgcacatattatgcattgttc 19967440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 20200775 - 20200727
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||| ||||| ||||| |  ||||||||||||||||||||||||    
T  20200775 tggtggccggggtttgaaccctggaccttgcatatattatgcattgttc 20200727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 27848228 - 27848184
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||    
T  27848228 tggtggccggggtttgaaccccggaccttgcatatattatgcatt 27848184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 42108119 - 42108163
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    ||||||||||||||||||||||||  ||||||||| |||| ||||    
T  42108119 tggtggccgaggtttaaaccccgaatcttgcatattttatacatt 42108163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 42791363 - 42791319
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||| ||||| |||||||  ||||||||||||||||||||||    
T  42791363 gtggccggggtttgaaccccggaccttgcatatattatgcattgt 42791319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 8717465 - 8717512
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8717465 atggtggccgaggtttgaaccccgaaccttgcatatattatgcattgt 8717512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 444483 - 444437
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||    
T  444483 tggtggccggggtttaaaccccggaccttgcatatattatgcattgt 444437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 6471581 - 6471531
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    ||||||||| ||||| |||||||| | ||||||||||||||||||||||||    
T  6471581 tggtggccggggtttgaaccccgaacattgcatatattatgcattgttcct 6471531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 29924918 - 29924956
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  29924918 ggtttaaaccccgaaccttgcatatattatgcattgttc 29924956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 44084263 - 44084310
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||||||    
T  44084263 tggtggccgaggtttgaacccgga-ccttgcatatattatgcattgttc 44084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 5179863 - 5179817
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||| |||| |||||||| ||||| ||||||||||||||||    
T  5179863 tggtggccgaagtttgaaccccgaaccttgtatatattatgcattgt 5179817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 12748971 - 12748925
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  12748971 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 12748925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 13357432 - 13357478
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||| ||  ||||||||||||||||||||||    
T  13357432 tggtggccgaggtttgaacctcgtaccttgcatatattatgcattgt 13357478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 32051523 - 32051569
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  32051523 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 32051569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 37141427 - 37141381
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||  |||| |||||||| ||||||||||||||||||||||    
T  37141427 tggtggccggagtttgaaccccgaaccttgcatatattatgcattgt 37141381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 30694441 - 30694478
Alignment:
Q  244 gtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  30694441 gtttaaaccccgaaccttgcatattttatgcattgttc 30694478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 37749989 - 37750038
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||| |||| ||||||||  | ||||||||||||||||||||||    
T  37749989 atggtggccggggttcaaaccccggactttgcatatattatgcattgttc 37750038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 44037359 - 44037404
Alignment:
Q  236 tggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||||||||| ||||  |||| ||||||||||||||||||    
T  44037359 tggccgaggtttaaacaccgaatcttgtatatattatgcattgttc 44037404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 44794962 - 44794917
Alignment:
Q  234 ggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||||||| ||| |||  ||||||||||||||||||||||    
T  44794962 ggtggccgaggtttgaactccggaccttgcatatattatgcattgt 44794917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 3650590 - 3650546
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    ||||||||| ||||| |||||||| |||| |||||||||||||||    
T  3650590 tggtggccggggtttgaaccccgaaccttacatatattatgcatt 3650546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 26196595 - 26196643
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||  |||| |||| ||| ||||||||||||||||||||||||    
T  26196595 tggtggccggagtttgaaccacgaaccttgcatatattatgcattgttc 26196643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 28951469 - 28951421
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||||||||||||| | || ||||||||||||||||||||||||    
T  28951469 tggtggccgaggtttaaactctgaaccttgcatatattatgcattgttc 28951421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 8629687 - 8629733
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||| |||||||| |||||||| ||||||||||||||||||||||    
T  8629687 tggtggtcgaggtttgaaccccgaaccttgcatatattatgcattgt 8629733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 33824951 - 33824905
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||    
T  33824951 tggtggccgaggtttgaaccccggaccttgcatatattatgcattgt 33824905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 21599027 - 21598979
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||| |||||||||||||  |||||||||||||||| |||||||    
T  21599027 tggtggccggggtttaaaccccgtaccttgcatatattatgtattgttc 21598979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 2617196 - 2617242
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||||||||||||| | | |||| |||||||||||||||||    
T  2617196 tggtggccgaggtttaaacctcaaaccttacatatattatgcattgt 2617242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 8569779 - 8569733
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  8569779 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 8569733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 9333801 - 9333755
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||| |||||||||||  |||||||||||| |||||||||    
T  9333801 tggtggccgagatttaaaccccggaccttgcatatataatgcattgt 9333755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 16390499 - 16390453
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||  |||| |||||||||||||||||    
T  16390499 tggtggccgaggtttgaaccccggaccttacatatattatgcattgt 16390453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 331879 - 331923
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||| || ||| | ||||||||||||||||||||||    
T  331879 gtggccgaggtttgaatcccaaaccttgcatatattatgcattgt 331923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 1535363 - 1535323
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  1535363 ggtttaaacttcaatccttgcatatattatgcattgttcct 1535323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Original strand, 12591028 - 12591064
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  12591028 ggtttaaatcccgaaccttgcatatattatgcattgt 12591064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 26356074 - 26356118
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||  |||| |||||||| ||||||||||||||||||||||    
T  26356074 gtggccggagtttgaaccccgaaccttgcatatattatgcattgt 26356118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 26548321 - 26548273
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||| | ||||| |||||||| ||||||||||||||| ||||||||    
T  26548321 tggtggctggggtttgaaccccgaaccttgcatatattatacattgttc 26548273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 7230350 - 7230304
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||    
T  7230350 tggtggccgaggtttgaaccccggaccttgcatatattatgcattgt 7230304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 34042310 - 34042265
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattg 278  Q
    |||||| |||||||| |||||||| |||||||||||||||||||||    
T  34042310 tggtggtcgaggtttgaaccccgaaccttgcatatattatgcattg 34042265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 25101381 - 25101427
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| |||| ||||||||| |||||||||| |||||||||||    
T  25101381 tggtggccggggttcaaaccccgacccttgcatattttatgcattgt 25101427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 26033345 - 26033299
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||| ||||||||||||| ||  |||||||||||||||||||||    
T  26033345 tggtggctgaggtttaaaccctgaagcttgcatatattatgcattgt 26033299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 28435239 - 28435285
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||| | ||||| |||||||| ||||||||||||||||||||||    
T  28435239 tggtggctggggtttgaaccccgaaccttgcatatattatgcattgt 28435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 49041972 - 49042018
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  49041972 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 49042018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 19479467 - 19479516
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||| || ||||| |||||||  ||||||||||||||||||||||||    
T  19479467 atggtggtcggggtttgaaccccggaccttgcatatattatgcattgttc 19479516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 3936697 - 3936649
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||| ||||  |||||||  ||||||||||||||||||||||||    
T  3936697 tggtggccggggttcgaaccccggaccttgcatatattatgcattgttc 3936649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 10148247 - 10148203
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||| ||| | || ||||||||||||||||||||||    
T  10148247 gtggccgaggtttgaactctgaaccttgcatatattatgcattgt 10148203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 22040710 - 22040674
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  22040710 ggtttgaaccccgaaccttgcatatattatgcattgt 22040674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 50152233 - 50152277
Alignment:
Q  237 ggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||| ||||| |||||||| ||||||||||||||||||| ||||    
T  50152233 ggccggggtttgaaccccgaaccttgcatatattatgcatcgttc 50152277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 3176965 - 3177014
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||||||    
T  3176965 tggtggccgtggtttaaacccaga-ccttgcatatattatgcattgttcct 3177014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 3755409 - 3755363
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||    
T  3755409 tggtggccgaggtttaaaccctggaccttgcatatattatgcattgt 3755363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 279
Target Start/End: Original strand, 42886502 - 42886546
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||    
T  42886502 gtggccgaggtttgaaccccgaaccttgcatattttatgcattgt 42886546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 52119447 - 52119400
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||||||| ||||  |||||||| ||||||||||||||||||||||    
T  52119447 atggtggccggggttcgaaccccgaaccttgcatatattatgcattgt 52119400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 10926539 - 10926493
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||  ||| |||||||| ||||||||||||||||||||||    
T  10926539 tggtggccgacatttgaaccccgaaccttgcatatattatgcattgt 10926493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Original strand, 20612270 - 20612316
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||| ||||| |||||| | ||||||||||||||||||||||||    
T  20612270 gtggccggggtttgaaccccaaaccttgcatatattatgcattgttc 20612316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 29631256 - 29631210
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| || ||||| ||||||||||||||||||||||    
T  29631256 tggtggccggggtttgaatcccgaaccttgcatatattatgcattgt 29631210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 38130950 - 38130996
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  38130950 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 38130996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 48796209 - 48796255
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||| |||||||||| |||||||||||    
T  48796209 tggtggccggggtttgaaccccgaaccttgcatatcttatgcattgt 48796255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 48849754 - 48849800
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  48849754 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 48849800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 913591 - 913636
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattg 278  Q
    ||||||| ||||||| |||||||  |||||||||||||||||||||    
T  913591 tggtggcagaggtttgaaccccggaccttgcatatattatgcattg 913636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 28965768 - 28965816
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||| ||| ||||| |||||||| |||| |||||||||||||||||||    
T  28965768 tggtgaccggggtttgaaccccgaaccttacatatattatgcattgttc 28965816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 39779084 - 39779048
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  39779084 ggtttgaaccccgaaccttgcatatattatgcattgt 39779048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 45334243 - 45334211
Alignment:
Q  249 aaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||| ||||||||||||||||||||||||    
T  45334243 aaccccgaaccttgcatatattatgcattgttc 45334211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 34521181 - 34521227
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||    
T  34521181 tggtggccgaggtttgaaccccggaccttgcatatattatgcattgt 34521227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 8094112 - 8094068
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcat 276  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  8094112 atggtggccggggtttaaaccccgcaccttgcatatattatgcat 8094068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 34595942 - 34595898
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||    
T  34595942 tggtggccgaggtttgaaccccggaccttgcatatattatgcatt 34595898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 47070912 - 47070868
Alignment:
Q  239 ccgaggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||    
T  47070912 ccgaggtttaaactccgaaccttgcatatattatgtattgttcct 47070868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 422617 - 422567
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    |||||||||| |||||||| |||| |||| ||||||||||||||| |||||    
T  422617 tggtggccgaagtttaaactccgaaccttacatatattatgcattattcct 422567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 7925433 - 7925388
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||| |||| |||||||||||||||||    
T  7925433 tggtggccgaggtttgaaccccgaacctt-catatattatgcattgt 7925388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 11913800 - 11913750
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    ||||| ||||||||| || ||||| ||||| ||||||||||||||||||||    
T  11913800 tggtgaccgaggtttgaatcccgaaccttgtatatattatgcattgttcct 11913750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 27533313 - 27533267
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||    
T  27533313 tggtggtcggggtttgaaccccgaaccttgcatatattatgcattgt 27533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 47417853 - 47417807
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||| ||||||||| ||| |||| ||||||||||||||||||||||    
T  47417853 tggtgaccgaggtttgaactccgaaccttgcatatattatgcattgt 47417807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 4715549 - 4715597
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||||||||  |||||| | |||||||||| |||||||||||||    
T  4715549 tggtggccgaggttcgaaccccaaaccttgcatattttatgcattgttc 4715597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 12268985 - 12269025
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    ||||| |||||||  ||||||||||||||||||||||||||    
T  12268985 ggtttgaaccccggaccttgcatatattatgcattgttcct 12269025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 26529681 - 26529726
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||    
T  26529681 atggtggtcggggtttaaaccccgaaccttgcatatattatgcatt 26529726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 48629055 - 48629102
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||| || |||||||||||||  ||||||||||||||||||||||    
T  48629055 atggtggtcggggtttaaaccccggaccttgcatatattatgcattgt 48629102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 7670502 - 7670456
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||| |||||||| |||||||  ||||||||||||||||||||||||    
T  7670502 gtggtcgaggtttgaaccccggaccttgcatatattatgcattgttc 7670456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 19988688 - 19988730
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    |||||||||||||||||| ||  ||||||||||||||||||||    
T  19988688 gtggccgaggtttaaaccacggaccttgcatatattatgcatt 19988730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 27462427 - 27462473
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  27462427 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 27462473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 2962716 - 2962761
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    |||||||||| | || ||||||||| ||||||||||||||||||||    
T  2962716 atggtggccgggattcaaaccccgaaccttgcatatattatgcatt 2962761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 9522983 - 9522934
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||| ||||  |||||| | ||||||||||||||||||||||||    
T  9522983 atggtggccggggttcgaaccccaaaccttgcatatattatgcattgttc 9522934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 10327024 - 10326976
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||||||||| ||||  || ||||||||||||||||||||||||    
T  10327024 atggtggccgaggtttgaacctgga-ccttgcatatattatgcattgttc 10326976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 42095933 - 42095977
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcat 276  Q
    |||||||| ||||||| |||||||  |||||||||||||||||||    
T  42095933 atggtggcagaggtttgaaccccggaccttgcatatattatgcat 42095977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 45088945 - 45088898
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  45088945 tggtggtcggggtttgaaccccga-ccttgcatatattatgcattgttc 45088898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 12909156 - 12909205
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||| |||||||||||| || |||| |||||||||||||||||||    
T  12909156 atggtggccaaggtttaaaccctgaaccttacatatattatgcattgttc 12909205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 42473962 - 42473915
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgttcc 282  Q
    ||||||| ||||| |||||||  |||||||||||||||||||||||||    
T  42473962 gtggccgtggtttgaaccccggaccttgcatatattatgcattgttcc 42473915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 11720963 - 11720918
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  11720963 tggtggccggggtttgaaccccga-ccttgcatatattatgcattgt 11720918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 281
Target Start/End: Original strand, 18589868 - 18589906
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  18589868 ggtttaaaccccggaccttgcatatattatgcattgttc 18589906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 22522792 - 22522838
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  22522792 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 22522838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 25979914 - 25979868
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| |||||||  ||||||||| ||||||||||||    
T  25979914 tggtggccgaggtttgaaccccggaccttgcatacattatgcattgt 25979868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 36736812 - 36736858
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||||||||| | |||||| ||||| ||||||||||||||||    
T  36736812 tggtggccgaggtttgagccccgaaccttgaatatattatgcattgt 36736858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 40715940 - 40715986
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  40715940 tggtggccggggtttgaaccccggaccttgcatatattatgcattgt 40715986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 12670064 - 12670109
Alignment:
Q  232 atggtggccgaggtttaaaccccgatccttgcatatattatgcatt 277  Q
    ||||||| | |||||| |||||||| ||||||||||||||||||||    
T  12670064 atggtggtcaaggtttgaaccccgaaccttgcatatattatgcatt 12670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 27903172 - 27903135
Alignment:
Q  244 gtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  27903172 gtttgaaccccgaaccttgcatatattatgcattgttc 27903135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 6894166 - 6894118
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttc 281  Q
    ||||||||||||||  |||||||| |||||||||| || ||||||||||    
T  6894166 tggtggccgaggttcgaaccccgaaccttgcatattttttgcattgttc 6894118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 3308 - 3346
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatg 273  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  3308 gtggccgaggtttgaaccccgaaccttgcatatattatg 3346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 7955 - 8005
Alignment:
Q  233 tggtggccgaggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    |||||||||| |||||||| |||| |||| ||||||||||||||| |||||    
T  7955 tggtggccgaagtttaaactccgaaccttacatatattatgcattattcct 8005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 279
Target Start/End: Complemental strand, 2400 - 2356
Alignment:
Q  235 gtggccgaggtttaaaccccgatccttgcatatattatgcattgt 279  Q
    ||||| ||||||| |||||| | ||||||||||||||||||||||    
T  2400 gtggctgaggtttgaaccccaaaccttgcatatattatgcattgt 2356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1127 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1127
Description:

Target: scaffold1127; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 1166 - 1206
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    ||||| |||||||  ||||||||||||||||||||||||||    
T  1166 ggtttgaaccccggaccttgcatatattatgcattgttcct 1206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 1973 - 1933
Alignment:
Q  243 ggtttaaaccccgatccttgcatatattatgcattgttcct 283  Q
    ||||| |||| ||| ||||||||||||||||||||||||||    
T  1973 ggtttgaaccacgaaccttgcatatattatgcattgttcct 1933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University