View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16544_low_14 (Length: 282)
Name: NF16544_low_14
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16544_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 32727734 - 32727819
Alignment:
| Q |
16 |
tatcatgagatgagagtactttacttacttaatctatcgtatttttcctgctagactcgtggtgctgtgaacatgacagtctttcc |
101 |
Q |
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| T |
32727734 |
tatcatgagatgagagtactttacttacttaatctatcgtatttttcctgctagactcgtggtgctgtgaacatgacagtctttcc |
32727819 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 264
Target Start/End: Original strand, 32727919 - 32727986
Alignment:
| Q |
201 |
ccagaagatacagtaattata----tatttccctttctcttaaactacaaaaacacattgggactcag |
264 |
Q |
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| T |
32727919 |
ccagaagatacagtaattatatatatatttccctttctcttaaactacaaaaacacattgggactcag |
32727986 |
T |
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