View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16544_low_15 (Length: 250)
Name: NF16544_low_15
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16544_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 2893097 - 2892880
Alignment:
| Q |
18 |
acttgaatacatattgattaattgtgttagtgaagactacaatgtagttagtcaggaattagactgttttgggttttagtaaggaatttactgagatgta |
117 |
Q |
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| T |
2893097 |
acttgaatacatattgattaattgtgttagtgaagactacaatgtagttagtcaggaattagactgatttgggttttagtaaggaatttactgagatgta |
2892998 |
T |
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| Q |
118 |
attttatcccaatagttttacattttatttcatatgaactgcaagtatcaaaagggaaagagaaggccatttagttgaagcttagttgtgtcttatgttt |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
2892997 |
attttatcccaatagttttacgttttatttcatatgaactgcaagtatcaaaagggaaggagaaggccatttacttgaagcttagttgtgtcttatgttt |
2892898 |
T |
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| Q |
218 |
tatctcatgaaatttcat |
235 |
Q |
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|||||||||||||||||| |
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| T |
2892897 |
tatctcatgaaatttcat |
2892880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 3157678 - 3157761
Alignment:
| Q |
50 |
aagactacaatgtagttagtcaggaattagactgttttgggttttagtaaggaatttactgagatgtaattttatcccaatagt |
133 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
3157678 |
aagactacaatgtagttagtcatgaattagactgttttgggttttagtaagaaatttactgagatgtaattttatccgaatagt |
3157761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 3156971 - 3157008
Alignment:
| Q |
18 |
acttgaatacatattgattaattgtgttagtgaagact |
55 |
Q |
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| T |
3156971 |
acttgaatacatattgattcattgtgttagtgaagact |
3157008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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