View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16544_low_16 (Length: 242)
Name: NF16544_low_16
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16544_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 14457627 - 14457402
Alignment:
| Q |
1 |
aaaccttccccaaaccaagttggaataataccggacagtatattgtaaccaagatccatggtttccaacctcgagaaatttcttaaagatgacggcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14457627 |
aaaccttccccaaaccaagttggaataataccggacagtatattgtaaccaagatccatggtttccaacctcgagaaatttcttaaagatgacggcaaat |
14457528 |
T |
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| Q |
101 |
cccctgaaaagtgattatcattaaggtgcaatgatctgagacgttttaactttcccaaagaaactggaattgtcccaaatagattattgttcccaaggtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14457527 |
cccctgaaaagtgattatcattaaggtgcaatgatctgagacgttttaactttcccaaagaaactggaattgtcccaaatagattattgttcccaaggtc |
14457428 |
T |
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| Q |
201 |
tagtacgtccaggaaagagcaatttg |
226 |
Q |
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|||||| || |||||||||||||||| |
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| T |
14457427 |
tagtacatctaggaaagagcaatttg |
14457402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14493723 - 14493948
Alignment:
| Q |
1 |
aaaccttccccaaaccaagttggaataataccggacagtatattgtaaccaagatccatggtttccaacctcgagaaatttcttaaagatgacggcaaat |
100 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||| | || |||| |||||||||||| || || |||||||||||||||| ||||||| |
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| T |
14493723 |
aaaccttccccaaaccaagttggaataacacctgacagtatattggaccctagattcatggtttccaaacttgacaaatttcttaaagatggtggcaaat |
14493822 |
T |
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| Q |
101 |
cccctgaaaagtgattatcattaaggtgcaatgatctgagacgttttaactttcccaaagaaactggaattgtcccaaatagattattgttcccaaggtc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| ||| ||| | ||||||||| ||||||| |||||||||||| |||| ||||||||||| |
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| T |
14493823 |
cccctgaaaagtgattatcattaaggtgcagtgatctgagtagttgtaattgacccaaagaacctggaatggtcccaaatagactattattcccaaggtc |
14493922 |
T |
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| Q |
201 |
tagtacgtccaggaaagagcaatttg |
226 |
Q |
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|||||| || || ||||||||||||| |
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| T |
14493923 |
tagtacatcgagtaaagagcaatttg |
14493948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14469305 - 14469530
Alignment:
| Q |
1 |
aaaccttccccaaaccaagttggaataataccggacagtatattgtaaccaagatccatggtttccaacctcgagaaatttcttaaagatgacggcaaat |
100 |
Q |
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|||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||| ||||| ||| | || ||||||||||||||||||||||||| |
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| T |
14469305 |
aaaccttccccaaaccaagttggaataacaccagacagtccattgtttccaagatccatagtttctaacattgacaaatttcttaaagatgacggcaaat |
14469404 |
T |
|
| Q |
101 |
cccctgaaaagtgattatcattaaggtgcaatgatctgagacgttttaactttcccaaagaaactggaattgtcccaaatagattattgttcccaaggtc |
200 |
Q |
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|||||||||||||||| ||||||||||| | |||||| || ||||||||| ||||| ||| |||||||||||||||| ||| |||| ||||||||||| |
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| T |
14469405 |
cccctgaaaagtgattgtcattaaggtgtagtgatcttagtagttttaactcacccaaggaatctggaattgtcccaaacagactattattcccaaggtc |
14469504 |
T |
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| Q |
201 |
tagtacgtccaggaaagagcaatttg |
226 |
Q |
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||||| ||||| ||| |||||||| |
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| T |
14469505 |
cagtacatccagtaaatggcaatttg |
14469530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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