View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16544_low_3 (Length: 492)

Name: NF16544_low_3
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16544_low_3
NF16544_low_3
[»] chr5 (1 HSPs)
chr5 (104-487)||(3920468-3920873)
[»] chr3 (4 HSPs)
chr3 (123-251)||(43263802-43263929)
chr3 (121-180)||(21708295-21708354)
chr3 (144-241)||(41799977-41800074)
chr3 (126-204)||(36747224-36747302)
[»] scaffold0700 (1 HSPs)
scaffold0700 (129-217)||(5144-5232)
[»] chr6 (2 HSPs)
chr6 (114-198)||(6562350-6562434)
chr6 (149-217)||(5720609-5720677)
[»] chr8 (2 HSPs)
chr8 (129-196)||(27823241-27823308)
chr8 (127-177)||(39240870-39240920)
[»] chr7 (4 HSPs)
chr7 (151-253)||(28117313-28117414)
chr7 (129-197)||(19527044-19527112)
chr7 (149-234)||(45266697-45266782)
chr7 (128-196)||(38947521-38947589)
[»] chr1 (3 HSPs)
chr1 (148-260)||(11803124-11803236)
chr1 (127-217)||(15826454-15826546)
chr1 (127-217)||(29141940-29142032)
[»] chr4 (2 HSPs)
chr4 (131-214)||(45685742-45685825)
chr4 (126-162)||(13968173-13968209)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 104 - 487
Target Start/End: Complemental strand, 3920873 - 3920468
Alignment:
Q  104 tgatgattccttaccagacaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaa 203  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3920873 tgataattccttaccagacaaccgtattacaaaatcaaccatttgattgaaagatattataatatagatcatatctattacatttgacattaattaaaaa 3920774  T
Q  204 taatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaactttaaaaaacgggttagttttagcag----------------------gcaca 281  Q
    | |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||                      |||||    
T  3920773 tcatttgatatgtcaatgacatacatcaaaagaaacttcttatgaactttaaaaaacgggttagttttagcagaggggaattatgagtgaaaaatgcaca 3920674  T
Q  282 aaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtgaatgaattaccactgagtagcaacattgaatgcactcaactactcattgt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920673 aaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtgaatgaattaccactgagtagcaacattgaatgcactcaactactcattgt 3920574  T
Q  382 tcatcgaattcaattttaactgtgaccacatcaacagcaacagcaactactttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcat 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920573 tcatcgaattcaattttaactgtgaccacatcaacagcaacagcaactactttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcat 3920474  T
Q  482 ctcact 487  Q
     |||||    
T  3920473 ttcact 3920468  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 43263929 - 43263802
Alignment:
Q  123 aaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgt 222  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||  | || |||||||||| | | || |||||||||| | |||     
T  43263929 aaccgttttacaaaatca-ccgtttgattgaaacatattataatatagatcatgtctacaaaatatgacattaatcatatattatttgatatggcaatga 43263831  T
Q  223 catacatcaaaagtaacttcttatgaact 251  Q
     ||| ||||||| |||| |||||||||||    
T  43263830 gataaatcaaaattaacgtcttatgaact 43263802  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 21708295 - 21708354
Alignment:
Q  121 acaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtcta 180  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |  ||||||||||||||    
T  21708295 acaaccgtattacaaaatcaatcgttggattgaaagatgttacatcatagatcatgtcta 21708354  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 41800074 - 41799977
Alignment:
Q  144 gtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaactt 241  Q
    |||||||||||| ||||||||| ||| ||||| ||||  | |||| |||||||| |||||  |||||||||||| ||   ||||||||||| ||||||    
T  41800074 gtttgattgaaatatattataacataaatcatatctacaaaattttacattaatcaaaaactatttgatatgtcaattaaatacatcaaaattaactt 41799977  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 36747302 - 36747224
Alignment:
Q  126 cgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaat 204  Q
    ||||||| |||||  || ||| |||||||| ||||||||| ||| ||||| ||||| | |||||| |||||||||||||    
T  36747302 cgtattaaaaaattgactgttagattgaaacatattataacatatatcatttctataaaatttgatattaattaaaaat 36747224  T

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Target: scaffold0700 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 5144 - 5232
Alignment:
Q  129 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtc 217  Q
    |||| ||||| || |||| ||||||||| |||||||| ||||||||||||||| |  |||||||||||| |||||| ||||||||||||    
T  5144 attaaaaaattaaacgttggattgaaagctattataacatagatcatgtctataaagtttgacattaataaaaaattatttgatatgtc 5232  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 198
Target Start/End: Complemental strand, 6562434 - 6562350
Alignment:
Q  114 ttaccagacaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaatt 198  Q
    |||||| | |||| |||||||||||||||| || ||||||||  |||||| | ||||||||||||||  | ||||||||||||||    
T  6562434 ttaccacataaccatattacaaaatcaaccattggattgaaaactattatcacatagatcatgtctacaaaatttgacattaatt 6562350  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 5720677 - 5720609
Alignment:
Q  149 attgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtc 217  Q
    |||||||||||| |||  ||||| ||||||||| | ||||||||| ||| | |||| ||||||||||||    
T  5720677 attgaaagatataatagcatagaccatgtctataaaatttgacatgaatcataaatcatttgatatgtc 5720609  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 27823308 - 27823241
Alignment:
Q  129 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaa 196  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||| | ||| | |||| |||||||    
T  27823308 attacaaaatcgaccgttggattgaaagatattataacatagatcatatttatgaaattttacattaa 27823241  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 39240870 - 39240920
Alignment:
Q  127 gtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgt 177  Q
    ||||||| ||||  |||||| |||||||| |||||||||||||||||||||    
T  39240870 gtattacgaaatagaccgttagattgaaacatattataatatagatcatgt 39240920  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 28117414 - 28117313
Alignment:
Q  151 tgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaac 250  Q
    |||||||||||||||||||||||||| ||||   |||||||||| ||   | ||||||||||||||| |||  || |||||||| |||| ||| ||||||    
T  28117414 tgaaagatattataatatagatcatg-ctatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaac 28117316  T
Q  251 ttt 253  Q
    |||    
T  28117315 ttt 28117313  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 19527044 - 19527112
Alignment:
Q  129 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaat 197  Q
    ||||||||||| |||||| ||||||||| |||||| | |||||||||||| |  | |||||||||||||    
T  19527044 attacaaaatccaccgttggattgaaagctattatcacatagatcatgtcaacaaaatttgacattaat 19527112  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 234
Target Start/End: Original strand, 45266697 - 45266782
Alignment:
Q  149 attgaaagatattataatatagatcatgt-ctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaa 234  Q
    ||||||||||||||||| |||||| || | |||| | |||| |||||||| ||||||||||||||||||| ||   |||||||||||    
T  45266697 attgaaagatattataacatagataattttctataa-atttaacattaataaaaaataatttgatatgtcaataagatacatcaaaa 45266782  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 38947521 - 38947589
Alignment:
Q  128 tattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaa 196  Q
    |||||||||||  || ||| ||||||||||||||| || ||||||||||| ||| | |||| |||||||    
T  38947521 tattacaaaattgactgttggattgaaagatattaaaacatagatcatgtgtataaaattttacattaa 38947589  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 260
Target Start/End: Complemental strand, 11803236 - 11803124
Alignment:
Q  148 gattgaaagatattataatatagatcat-gtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttat 246  Q
    |||||| ||||||||||||||||||| | || ||| | |||||||||||||  ||||||| ||||| |||| |||  || |||||||| |||| ||||||    
T  11803236 gattgagagatattataatatagatctttgtatataaaatttgacattaatcgaaaataagttgatttgtcaatgagatgcatcaaaattaacgtcttat 11803137  T
Q  247 gaactttaaaaaac 260  Q
     || ||||||||||    
T  11803136 caa-tttaaaaaac 11803124  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Complemental strand, 15826546 - 15826454
Alignment:
Q  127 gtattacaaaatcaaccgtttgattgaaagatattataatatagatca--tgtctattacatttgacattaattaaaaataatttgatatgtc 217  Q
    |||||| |||||  ||| || |||||| ||||||||||||||| ||||  ||| ||| | ||||||||||||| | |||| ||||||||||||    
T  15826546 gtattataaaattgaccattggattgatagatattataatataaatcatgtgtatataaaatttgacattaatcataaattatttgatatgtc 15826454  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 217
Target Start/End: Original strand, 29141940 - 29142032
Alignment:
Q  127 gtattacaaaatcaaccgtttgattgaaagatattataatatagatc--atgtctattacatttgacattaattaaaaataatttgatatgtc 217  Q
    |||||| |||||| |  ||| |||||||| |||||||||||||| ||  || | ||| | |||||||||||||||||||| |||| |||||||    
T  29141940 gtattataaaatcgattgttggattgaaaaatattataatatagctctcatctatataaaatttgacattaattaaaaatcatttaatatgtc 29142032  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 45685742 - 45685825
Alignment:
Q  131 tacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatat 214  Q
    ||||||||| |  ||| ||||||||||| ||||||||||||| |||| ||| | |||||| |||||| | |||| |||||||||    
T  45685742 tacaaaatcgattgttagattgaaagatgttataatatagataatgtttataaaatttgatattaataagaaatcatttgatat 45685825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 13968209 - 13968173
Alignment:
Q  126 cgtattacaaaatcaaccgtttgattgaaagatatta 162  Q
    |||||||||||||  ||||||||||||||||||||||    
T  13968209 cgtattacaaaattgaccgtttgattgaaagatatta 13968173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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