View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16544_low_5 (Length: 354)

Name: NF16544_low_5
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16544_low_5
NF16544_low_5
[»] chr7 (3 HSPs)
chr7 (18-344)||(23720246-23720575)
chr7 (78-125)||(43160491-43160539)
chr7 (82-126)||(21238823-21238868)
[»] chr1 (1 HSPs)
chr1 (77-122)||(50195468-50195515)
[»] chr6 (1 HSPs)
chr6 (80-126)||(29449687-29449734)
[»] chr5 (2 HSPs)
chr5 (77-123)||(25393928-25393975)
chr5 (78-106)||(27239572-27239600)
[»] chr8 (2 HSPs)
chr8 (81-126)||(32691749-32691795)
chr8 (77-124)||(31681833-31681881)
[»] chr3 (1 HSPs)
chr3 (76-125)||(45382750-45382800)
[»] chr4 (1 HSPs)
chr4 (77-126)||(10435082-10435133)


Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 23720575 - 23720246
Alignment:
Q  18 agaaccgacacttctaattgaagacgtgcacggtgtccgacagatgtccacgtacacatcaccgacacatgtgattacattcaattatgatttttcttaa 117  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23720575 agaacctacacttctaattgaagacgtgcacggtgtccaacagatgtccacgtacacatcaccgacacatgtgattacattcaattatgatttttcttaa 23720476  T
Q  118 attactacctgattttccataacccacaaaaagaccccaatttccaaaattagcataattcaacaaaacaaagaaaatccattatctaaaatccaaattt 217  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23720475 attactacctgatttcccttaacccacaaaaagaccccaatttccaaaattagcataattcaacaaaacaaagaaaacccattatctaaaatccaaattt 23720376  T
Q  218 atcaacacagaacatcaaaatatttcaatcagaactgcaac---aaataaaaaacaattacttgatttcaagatgcagaggctctttaaacccttcagac 314  Q
    ||||||||| |||||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23720375 atcaacacaaaacatcaaaatatttcaatcagaactgcaacaaaaaaaaaaaaacaattacttgatttcaagatgcagaggctctttaaacccttcagac 23720276  T
Q  315 aaagcatgaacaagcagcttcccattcatc 344  Q
    ||||||||||||||||||||||||||||||    
T  23720275 aaagcatgaacaagcagcttcccattcatc 23720246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 125
Target Start/End: Complemental strand, 43160539 - 43160491
Alignment:
Q  78 accgacacatgtgattacattcaattatgat-ttttcttaaattactac 125  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  43160539 accgacacatgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 21238868 - 21238823
Alignment:
Q  82 acacatgtgattacattcaattatga-tttttcttaaattactacc 126  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||    
T  21238868 acacatgtgattacattcaattttgacattttcttaaattactacc 21238823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 50195468 - 50195515
Alignment:
Q  77 caccgacacatgtgattacattcaattatg--atttttcttaaattac 122  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||    
T  50195468 caccgacacatgtgattacattcaattatgtcattttttttaaattac 50195515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 29449734 - 29449687
Alignment:
Q  80 cgacacatgtgattacattcaattatgat-ttttcttaaattactacc 126  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||    
T  29449734 cgacacatgtgattacattcaattatgttattttctgaaattactacc 29449687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 25393928 - 25393975
Alignment:
Q  77 caccgacacatgtgattacattcaattatg-atttttcttaaattact 123  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  25393928 caccgacacatgtgattacattcaactatgtattttccttaaattact 25393975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 27239600 - 27239572
Alignment:
Q  78 accgacacatgtgattacattcaattatg 106  Q
    |||||||||||||||||||||||||||||    
T  27239600 accgacacatgtgattacattcaattatg 27239572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 32691795 - 32691749
Alignment:
Q  81 gacacatgtgattacattcaattatg-atttttcttaaattactacc 126  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  32691795 gacacatgtgattacattcaattatgtcattttcttaaattactacc 32691749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  77 caccgacacatgtgattacattcaattatg-atttttcttaaattacta 124  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 45382800 - 45382750
Alignment:
Q  76 tcaccgacacatgtgattacattcaattatgat-ttttcttaaattactac 125  Q
    ||||||||| |||||||||||||||| |||| | |||||||||||||||||    
T  45382800 tcaccgacatatgtgattacattcaaatatgttattttcttaaattactac 45382750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 10435082 - 10435133
Alignment:
Q  77 caccgacacatgtgattacattcaattatg--atttttcttaaattactacc 126  Q
    |||| |||||||||||||||||||||| ||  |||||| |||||||||||||    
T  10435082 cacctacacatgtgattacattcaattttgtcattttttttaaattactacc 10435133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University