View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16544_low_8 (Length: 315)
Name: NF16544_low_8
Description: NF16544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16544_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 126 - 298
Target Start/End: Original strand, 13304191 - 13304363
Alignment:
| Q |
126 |
catacaacttctttttgcattttctatggacttgaaacaattttgttttataaatatcaacataaaaagttgcttgaaggagacacatagaaatcaaaat |
225 |
Q |
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| T |
13304191 |
catataacttctttttgtattttctatggacttgaaacaattttgttttataaatatcaacataaaaagttgcttgaaggagacacatagaaatcaaaat |
13304290 |
T |
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| Q |
226 |
tagacaggatacgtacctataaccgatgtcttcaacccaataagaacaataagcaacaaaataaccatattaa |
298 |
Q |
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| T |
13304291 |
tagacaggatacgtacctataaccgatgtcttcaacccaataagaacaataagcaacaaaataaccatattaa |
13304363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 136 - 296
Target Start/End: Complemental strand, 13430902 - 13430741
Alignment:
| Q |
136 |
ctttttgcattttctatggacttgaaacaattttg-ttttataaatatcaacataaaaagttgcttgaaggagacacatagaaatcaaaattagacagga |
234 |
Q |
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| T |
13430902 |
ctttttgtattttctatggacttgagacaattttgcttttataaatatcaacataaaaagttgcttgaaggagaaacatagaaatcaagattagacaaga |
13430803 |
T |
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| Q |
235 |
tacgtacctataaccgatgtcttcaacccaataagaacaataagcaacaaaataaccatatt |
296 |
Q |
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| T |
13430802 |
tgcatacctattcctgaagtcttcaacccaataagaacaataagaaacaaaataatcatatt |
13430741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 13304024 - 13304106
Alignment:
| Q |
33 |
taactcttaaatttaaattaaataaaatgcccaaactatattcttttatttgttagtgtgaaattaaaacatataacttttat |
115 |
Q |
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| T |
13304024 |
taactcttaaatttaaattaaataaaatgcccacactatattcttttatttgttagtgtgagattaaaacatataacttttat |
13304106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 13430978 - 13430898
Alignment:
| Q |
33 |
taactcttaaatttaaattaaataaaatgcccaaactatattcttttatttgttagtgtgaaattaaaacatataactttt |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||| |
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| T |
13430978 |
taactcttaaatttaaattaaataaaatacccaaactatattattttatttgttagtgttagattaaaacatataactttt |
13430898 |
T |
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