View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16545_high_2 (Length: 303)
Name: NF16545_high_2
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_high_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 41337959 - 41337672
Alignment:
| Q |
16 |
ctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctccttcgtca |
115 |
Q |
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| T |
41337959 |
ctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctccttcgtca |
41337860 |
T |
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| Q |
116 |
catggatcacccaaatgtaagtgttcatctcttatttattttcatattttactacttgctcatcaaattcgtannnnnnnnnnnnngaagttgaagaaga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41337859 |
catggatcacccaaatgtaagtgttcatctcttatttattttcatattttactacttgctcatcaaattcgtatttttttttttttgaagttgaagaaga |
41337760 |
T |
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| Q |
216 |
ggaaaattattattaattaaagtggcaatagtggccattttacaacggtcggatttgaactccgcccttgaggttataaggtcaaact |
303 |
Q |
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| T |
41337759 |
ggaaaattattattaattaacgtggcaatagtggccattttacaacggtcggatttgaactccgcccttgaggttataaggtcaaact |
41337672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 11057611 - 11057668
Alignment:
| Q |
31 |
aagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggac |
88 |
Q |
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|||| ||||| ||||||||||| |||||||||||||| | ||| |||||||||||||| |
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| T |
11057611 |
aagtcgccattaagaagattggcaatgcatttgacaacagaatagatgctaaaaggac |
11057668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 2607390 - 2607495
Alignment:
| Q |
16 |
ctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctccttcgtca |
115 |
Q |
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||||||||||||| ||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
2607390 |
ctgatacacatgaggaagttgccatcaagaagattgccaatacatttgacaacattattgatgctaaaaggactttgagggaaattaagcttcttcgtca |
2607489 |
T |
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| Q |
116 |
catgga |
121 |
Q |
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|||||| |
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| T |
2607490 |
catgga |
2607495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 29767891 - 29767798
Alignment:
| Q |
31 |
aagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctccttcgtcacatggatca |
124 |
Q |
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| T |
29767891 |
aagttgccattaagaaggttggcaatgcatttgacaacagaattgatgctaaaaggaccttacgagaaattaaacttcagcggcacatggatca |
29767798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 34415894 - 34415993
Alignment:
| Q |
25 |
atgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctccttcgtcacatggatca |
124 |
Q |
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| T |
34415894 |
atgaacatgttgcggttaagaagattgcaaatgcatttgacaacaagattgatgctaagaggactctccgtgaaatcaagctgcttcgccatatggatca |
34415993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 25495944 - 25495988
Alignment:
| Q |
217 |
gaaaattattattaattaaagtggcaatagtggccattttacaac |
261 |
Q |
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| T |
25495944 |
gaaaattatgattaattaaagtggtattagtagccattttacaac |
25495988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 33785469 - 33785509
Alignment:
| Q |
219 |
aaattattattaattaaagtggcaatagtggccattttaca |
259 |
Q |
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| T |
33785469 |
aaattatcattaattaaagtggcattattggccattttaca |
33785509 |
T |
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