View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16545_high_3 (Length: 298)
Name: NF16545_high_3
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 46528221 - 46528007
Alignment:
| Q |
20 |
ttttggagatgatgttatccaactaaaaacagagaattctagttgccatagaaatatgaatttcttaccttgatgcgatctgcatcagacaatggctttg |
119 |
Q |
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| T |
46528221 |
ttttggagatgatgttatccaactaaaaacagagaattctagttgccatagaaatatgaatttcttaccttgatgcgatctgcatctgacaatggctttg |
46528122 |
T |
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| Q |
120 |
agtgcacatcttttcctaaaatttgagctgcaatgtcaatcacagggagcggttctataaacgccgtggatgccatgtctggaagaaccnnnnnnntaga |
219 |
Q |
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| T |
46528121 |
agtgcacatcttttcctaaaatttgagctgcaatgtcaatcacagggagcggttctataaacgccgtggatgccatgtctggaagaaccaaaaaaataga |
46528022 |
T |
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| Q |
220 |
agagaaacaaagata |
234 |
Q |
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| T |
46528021 |
agagaaacaaagata |
46528007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 46527938 - 46527893
Alignment:
| Q |
240 |
cttgtgttaaggacgaatcaagtggttgaactcaagtggttaatga |
285 |
Q |
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| T |
46527938 |
cttgtgttaaggacgaatcaagtggttgaactcaagtggttaatga |
46527893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 43030250 - 43030396
Alignment:
| Q |
17 |
aacttttggagatgatgttatccaactaaaaacagagaattctagttgccatagaaatatgaatttcttaccttgatgcgatctgcatcagacaatggct |
116 |
Q |
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| T |
43030250 |
aacttttaaagatgatattatcgaactaaaaacaaaaaattctagtttccatagaaaaataaatttcttac--------ggtctgcatttgacaatggct |
43030341 |
T |
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| Q |
117 |
ttgagtgcacatcttttcctaaaatttgagctgcaatgtcaatcacagggagcgg |
171 |
Q |
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| T |
43030342 |
ttgagggcacatgttttcataaaatttgagctgcagtgtcaatcaaaaggagcgg |
43030396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 43030423 - 43030459
Alignment:
| Q |
216 |
tagaagagaaacaaagatatgcatcttgtgttaagga |
252 |
Q |
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| T |
43030423 |
tagaagaaaaacaaagaaatgcatcttgtgttaagga |
43030459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 24593656 - 24593561
Alignment:
| Q |
85 |
taccttgatgcgatctgcatcagacaatggctttgagtgcacatcttttcctaaaatttgagctgcaatgtcaatcacagggagcggttctataaa |
180 |
Q |
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| T |
24593656 |
taccttgacacgatctgcatctgacaatggttttgagtgcacatctttcccaagaatttgagcaacgaagtcaattacaggtagtggttcaataaa |
24593561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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