View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16545_high_5 (Length: 282)
Name: NF16545_high_5
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_high_5 |
 | |
|
| [»] chr3 (29 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10126619 - 10126900
Alignment:
| Q |
1 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10126619 |
acagatcagtttcagaacttgctttcaactacaaactcaaatggagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
10126718 |
T |
|
| Q |
101 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10126719 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
10126818 |
T |
|
| Q |
201 |
ggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10126819 |
ggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
10126900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10031694 - 10031975
Alignment:
| Q |
1 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10031694 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
10031793 |
T |
|
| Q |
101 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10031794 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaa |
10031893 |
T |
|
| Q |
201 |
ggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10031894 |
ggatgacaaagagacaataatgaacatgttgctatcacagagagacgcatcccataataatataggtgttgttgcaattttg |
10031975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10663217 - 10663498
Alignment:
| Q |
1 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663217 |
acagatcagtttcagaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
10663316 |
T |
|
| Q |
101 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10663317 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctctcatggtgggtaggaa |
10663416 |
T |
|
| Q |
201 |
ggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10663417 |
gggtgacaaagagacaataatgaacatgttgctatcacagagagacacaacccataataatataggtgttgttgcaattttg |
10663498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10183933 - 10184214
Alignment:
| Q |
1 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10183933 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatgaagaagatttataaaaggctgcaaacttttgtccagc |
10184032 |
T |
|
| Q |
101 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10184033 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
10184132 |
T |
|
| Q |
201 |
ggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
10184133 |
ggatgacaaagagacaataatgaacatgttgctgtcacagagagacacaacccataatgctataggtgttgttgcaattttg |
10184214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 10260389 - 10260670
Alignment:
| Q |
1 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260389 |
acagatcagtttcggaacttgctttcaacttcaaactcaaatgaagagatcaattctgaaatgcagaagatttgtaaaaggctgcaaacttttgtccagc |
10260488 |
T |
|
| Q |
101 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260489 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
10260588 |
T |
|
| Q |
201 |
ggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||| || | ||||||||||||||||||||||||||| |
|
|
| T |
10260589 |
ggatgacaaagagacaataatgaacatgttgctatcacagagagaaacaaccaacaataatataggtgttgttgcaattttg |
10260670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 11769056 - 11769206
Alignment:
| Q |
132 |
aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttg |
231 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11769056 |
aagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatagtgggtaggaagaatgacaaagagacaataatgaacatgttg |
11769155 |
T |
|
| Q |
232 |
ctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11769156 |
ctatcacagagagacacaatccataataatataggtgttgttgcaattttg |
11769206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 132 - 282
Target Start/End: Complemental strand, 10376092 - 10375942
Alignment:
| Q |
132 |
aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttg |
231 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
10376092 |
aagtggtagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgataaagacactataatgaacatgttg |
10375993 |
T |
|
| Q |
232 |
ctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10375992 |
ctatcagagacagacacatcgcataataatataggtgttgttgcaattttg |
10375942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 9838683 - 9838833
Alignment:
| Q |
132 |
aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttg |
231 |
Q |
| |
|
||||| ||||||||||| |||| ||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9838683 |
aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacatgttg |
9838782 |
T |
|
| Q |
232 |
ctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
9838783 |
ctatctcaaagagacacaacccataacaatataggtgttgttgcaattttg |
9838833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 9849561 - 9849711
Alignment:
| Q |
132 |
aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttg |
231 |
Q |
| |
|
||||| ||||||||||| |||| ||||| ||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9849561 |
aagtgctagagtttctcgtagaacaccttctagttcaggggtaaatgaatctgtcgtggtgggtaggaagggtgacaaagagacaataatgaacatgttg |
9849660 |
T |
|
| Q |
232 |
ctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|||||||| ||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
9849661 |
ctatctcaaagagacacaacccataacaatataggtgttgttgcaattttg |
9849711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 133 - 282
Target Start/End: Original strand, 10580424 - 10580573
Alignment:
| Q |
133 |
agtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgc |
232 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||| ||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580424 |
agtgctagagtttctcatggaactccttcaagttctgtgtttaacgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgc |
10580523 |
T |
|
| Q |
233 |
tatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10580524 |
tatcacagagaaacacaatccataataatataggtgttgttgcaattttg |
10580573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 10364020 - 10363896
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccata |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| || | | |
|
|
| T |
10364020 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctttcaaagagagaaacaaccgaca |
10363921 |
T |
|
| Q |
257 |
ataatataggtgttgttgcaatttt |
281 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10363920 |
ataatataggtgttgttgcaatttt |
10363896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 132 - 281
Target Start/End: Complemental strand, 10434291 - 10434142
Alignment:
| Q |
132 |
aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttg |
231 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434291 |
aagtgggagagtttctcatagaaatccttcaagttctgtggtcaatgaatctttcatggttggaaggaaggatgacaaagagacaataatgaacatgttg |
10434192 |
T |
|
| Q |
232 |
ctatctcagagagacacatcccataataatataggtgttgttgcaatttt |
281 |
Q |
| |
|
||||| |||||| ||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
10434191 |
ctatcacagagaaacacaactcataataagataggtgttgttgcaatttt |
10434142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 10088637 - 10088761
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccata |
256 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||| || | | |
|
|
| T |
10088637 |
ccttcaagttcggtggtaaatgaatctgtcatggtgggtaggaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaaccgaca |
10088736 |
T |
|
| Q |
257 |
ataatataggtgttgttgcaatttt |
281 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10088737 |
ataatataggtgttgttgcaatttt |
10088761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 157 - 281
Target Start/End: Original strand, 10195520 - 10195644
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccata |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||| ||| || | | |
|
|
| T |
10195520 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtagaaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaaccgaca |
10195619 |
T |
|
| Q |
257 |
ataatataggtgttgttgcaatttt |
281 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
10195620 |
ataatataggtgttgttgcaatttt |
10195644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 10500304 - 10500455
Alignment:
| Q |
61 |
atggagaagatttgtaaaaggctgcaaacttttgtccagcagagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgcctt |
160 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| | | ||||| ||| |||||||||||||||||||||| |||| |||| |
|
|
| T |
10500304 |
atggagaagatgtgtaaaaggctgcaaacttttgtccagcagaaagatatccttggcttacaaagaactgtaagtggtagagtttctcgtagaacacctt |
10500403 |
T |
|
| Q |
161 |
caagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10500404 |
caagttcagtggtaaatgaatctgtcatggtgggtaggaatgatgataaaga |
10500455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 10077116 - 10077241
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccata |
256 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| | || ||||||||||||||||||||||||||||||||| || | | | |||||| |
|
|
| T |
10077116 |
ccttcaagttcagtggtaaatgaatctgagatggttggtatggagcgtgacaaagagacaataatgaacatgttgctatcagggatgggcggaacccata |
10077215 |
T |
|
| Q |
257 |
ataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
10077216 |
ataagataggtgttgttgcaattttg |
10077241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 10889131 - 10889232
Alignment:
| Q |
135 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgcta |
234 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10889131 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
10889230 |
T |
|
| Q |
235 |
tc |
236 |
Q |
| |
|
|| |
|
|
| T |
10889231 |
tc |
10889232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 281
Target Start/End: Complemental strand, 11160261 - 11160115
Alignment:
| Q |
135 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgcta |
234 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || |||| |||||||||||| ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
11160261 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgcatctgtcatggttggtagaaatgatgataaagagacaataatgaacatgttgcta |
11160162 |
T |
|
| Q |
235 |
tctcagagagacacatcccataataatataggtgttgttgcaatttt |
281 |
Q |
| |
|
|| |||| ||| | |||| |||||||| |||||||||||||| |
|
|
| T |
11160161 |
tcagagagtagcactggcaataacaatataggcgttgttgcaatttt |
11160115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 236
Target Start/End: Original strand, 8861111 - 8861212
Alignment:
| Q |
135 |
tggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgcta |
234 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| || ||||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
8861111 |
tggtaaagtttctcgtagaaccccttcaagttcagtagttaatgaatctgtcatggttggtagaaatgatgataaagagacagtaatgaacatgttgcta |
8861210 |
T |
|
| Q |
235 |
tc |
236 |
Q |
| |
|
|| |
|
|
| T |
8861211 |
tc |
8861212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 10527152 - 10527237
Alignment:
| Q |
127 |
actgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga |
212 |
Q |
| |
|
|||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
10527152 |
actgtaagtgatagattttctcgtagaaccccttcaagttcagtggtaaatgaatctgtcattgtgggtaggaatgatgataaaga |
10527237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 11131248 - 11131124
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccata |
256 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||| ||| | ||| |
|
|
| T |
11131248 |
ccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagagacaataacgaacatgttgctatcaaagagcagcactagcaata |
11131149 |
T |
|
| Q |
257 |
ataatataggtgttgttgcaatttt |
281 |
Q |
| |
|
| ||||| ||||||||||||||||| |
|
|
| T |
11131148 |
acaatatcggtgttgttgcaatttt |
11131124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 13332733 - 13332808
Alignment:
| Q |
139 |
agagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagaga |
214 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
13332733 |
agagtttctcttagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagaga |
13332808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 11782338 - 11782173
Alignment:
| Q |
47 |
agatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagcagagcaccgccatcggcttgcaacacactgtaagtggtagagtttc |
146 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||||||||||||||||||| |||| | | ||||||||| || ||||||||| ||||||| |
|
|
| T |
11782338 |
agatcaattccaagatggagaagatgtgtaaaaggctgcaaacttttgtccaccagaaagatacacttggcttgcaaagaacggtaagtggtggagtttc |
11782239 |
T |
|
| Q |
147 |
tcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga |
212 |
Q |
| |
|
| |||| ||||||||||||||| ||||| |||||| | ||||||||||||| ||||| ||||| |
|
|
| T |
11782238 |
ttctagaaccccttcaagttcagtgctaaatcaatctgacgtggtgggtaggaatgatgataaaga |
11782173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 11149076 - 11148952
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccata |
256 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||||| ||||| |||||||||||||||| ||||| ||||||||||||||| |||| ||| | ||| |
|
|
| T |
11149076 |
ccttctagttctgtggttaatgaatcattcatggttggtagaaaggatgacaaagagataataacgaacatgttgctatcaaagagcagcactagcaata |
11148977 |
T |
|
| Q |
257 |
ataatataggtgttgttgcaatttt |
281 |
Q |
| |
|
| ||||| ||||||||||||||||| |
|
|
| T |
11148976 |
acaatatcggtgttgttgcaatttt |
11148952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 13289494 - 13289569
Alignment:
| Q |
139 |
agagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagaga |
214 |
Q |
| |
|
|||||||||| |||| ||||||||||||| |||||||| ||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
13289494 |
agagtttctcttagaacgccttcaagttcaatggtaaataaatctgttatggttggtaggaaggatgataaagaga |
13289569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 13343936 - 13343993
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagaga |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
13343936 |
ccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagaga |
13343993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 13160809 - 13160876
Alignment:
| Q |
139 |
agagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
206 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
13160809 |
agagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatga |
13160876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 13170860 - 13170935
Alignment:
| Q |
139 |
agagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagaga |
214 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||||||||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
13170860 |
agagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagaga |
13170935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 212
Target Start/End: Original strand, 10517198 - 10517363
Alignment:
| Q |
47 |
agatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagcagagcaccgccatcggcttgcaacacactgtaagtggtagagtttc |
146 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||| ||||||||||||||||| |||| | | ||||||||| || ||||||||| ||||||| |
|
|
| T |
10517198 |
agatcaattccaagatggagaagatgtgtaaaagactgcaaacttttgtccaacagaaagatacacttggcttgcaaagaacggtaagtggtggagtttc |
10517297 |
T |
|
| Q |
147 |
tcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaaga |
212 |
Q |
| |
|
| |||| | ||||||||| ||| |||||||||||| | ||||||||||||| ||||| ||||| |
|
|
| T |
10517298 |
ttctagaaccctttcaagttcggtgctaaatgaatctgacgtggtgggtaggaatgatgataaaga |
10517363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 26906719 - 26906869
Alignment:
| Q |
132 |
aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaacatgttg |
231 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26906719 |
aagtgctagagtttctcgtagaacaccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaatatgttg |
26906818 |
T |
|
| Q |
232 |
ctatctcagagagacacatcccataataatataggtgttgttgcaattttg |
282 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26906819 |
ctatcagagagagacacaacccataataatataggtgttgttgcaattttg |
26906869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 11484705 - 11484904
Alignment:
| Q |
1 |
acagatcagtttcggaacttgctttcaactacaaactcaaatgaagagatcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11484705 |
acagatcagttttggaacttgctttcaactaaaaactcaaatggagagagcaattctgaaatggagaagatttgtaaaaggctgcaaacttttgtccagc |
11484804 |
T |
|
| Q |
101 |
agagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
200 |
Q |
| |
|
|||| | | | | ||||||||| |||||||| ||||||||||||| |||| || |||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
11484805 |
agagtaacatcttgggcttgcaaagaactgtaagaggtagagtttctcgtagaacaccatcaagttcagtggtgaatgaatctgttatggtgggaaggaa |
11484904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Complemental strand, 44957956 - 44957888
Alignment:
| Q |
132 |
aagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaa |
200 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||| ||| ||||||||| | |||||||| ||||| |
|
|
| T |
44957956 |
aagtgctagagtttctcatagaacaccttcaagttcaggggttaatgaatctattatggtgggcaggaa |
44957888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 61 - 206
Target Start/End: Complemental strand, 17853265 - 17853120
Alignment:
| Q |
61 |
atggagaagatttgtaaaaggctgcaaacttttgtccagcagagcaccgccatcggcttgcaacacactgtaagtggtagagtttctcatagactgcctt |
160 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| | | | |||||||| || ||||||||||||||||||| |||| |||| |
|
|
| T |
17853265 |
atggagaagatgtgtaaaaggttgcaaacttttgtccagcagaaagacatcctttgcttgcaaagaacggtaagtggtagagtttctcgtagaacccctt |
17853166 |
T |
|
| Q |
161 |
caagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
206 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
17853165 |
caagttccgtggtaaatgaatctgtcatggtaggaaggaatgatga |
17853120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 50030 - 49981
Alignment:
| Q |
157 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50030 |
ccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatga |
49981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 146179 - 146104
Alignment:
| Q |
139 |
agagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagaga |
214 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
146179 |
agagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggtaggaaggatgataaagaga |
146104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 136128 - 136053
Alignment:
| Q |
139 |
agagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagaga |
214 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||||||||||| ||||| || ||||||||||| ||||||| |
|
|
| T |
136128 |
agagtttctctaagaacgccttcaagttcaatggtaaatgaatctgttatggttggaaggaaggatgataaagaga |
136053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 236
Target Start/End: Complemental strand, 31679985 - 31679876
Alignment:
| Q |
127 |
actgtaagtggtagagtttctcatagactgccttcaagttcagtggtaaatgaatctgtcatggtgggtaggaaggatgacaaagagacaataatgaaca |
226 |
Q |
| |
|
|||||||||||||| |||| || |||| |||||||||||| | ||| || ||||| ||||||| ||||||||| ||| ||||||| | ||| || | |
|
|
| T |
31679985 |
actgtaagtggtagggtttttcttagaacaccttcaagttcactagtagatcaatctttcatggttggtaggaagagtgataaagagaaactaactaata |
31679886 |
T |
|
| Q |
227 |
tgttgctatc |
236 |
Q |
| |
|
|||||||||| |
|
|
| T |
31679885 |
tgttgctatc |
31679876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University