View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16545_high_9 (Length: 209)
Name: NF16545_high_9
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 11684509 - 11684384
Alignment:
| Q |
15 |
atgaatgaagattggaaggaatacgatttaacggcaatgaagggagagtgtgtgagtaaaggtctaaacaagaccgtagtataaacataaacatgtctag |
114 |
Q |
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| T |
11684509 |
atgaatgaagattggaaggaatacgatttaacggcaatgaagggagagtgtgtgagtaaaggtctaaacaagaccgtagtataaacataaacatgtctag |
11684410 |
T |
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| Q |
115 |
aagtaacagcagtagtttccaaaatc |
140 |
Q |
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| T |
11684409 |
aagtaacagcagtagtttccaaaatc |
11684384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 11716649 - 11716774
Alignment:
| Q |
15 |
atgaatgaagattggaaggaatacgatttaacggcaatgaagggagagtgtgtgagtaaaggtctaaacaagaccgtagtataaacataaacatgtctag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11716649 |
atgaatgaagattggaaggaatacgatttaacggcaatgaagggagagtgtgtgagtaaaggtctaaacaagaccgtagtataaacataaacatgtctag |
11716748 |
T |
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| Q |
115 |
aagtaacagcagtagtttccaaaatc |
140 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11716749 |
aagtaacagcagtagtttccaaaatc |
11716774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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